Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Auricularia_20auricula-judae_20[genbank_20GCA_5F002092955.1_202017- 04-17] 534 sequences; 43,569,032 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq524 104 2e-17 >seq524 Length=649165 Score = 104 bits (114), Expect = 2e-17 Identities = 160/223 (72%), Gaps = 8/223 (4%) Strand=Plus/Plus Query 48507 GCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT- 48565 |||| |||| || | ||| || ||||||||||| || || ||||| || | || || Sbjct 612698 GCAAGCTTACCA--AGATGCAGCGTGCTCTCCTTCTGGATATTGTAGTC-GGAAAGCGTG 612754 Query 48566 CGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTT 48625 ||| ||||||| || ||||| ||| || |||| | ||||||||| || ||| | | | Sbjct 612755 CGCCCGTCCTCGAGTTGCTTGCCGGCGAAAATAAGACGCTGCTGGTCGGGCGGGATTCCT 612814 Query 48626 TCCTTGTCCATAATTTTCTGCTTGA--TAGACGCTATGGTATCGGTAGACTCCGTCTCGA 48683 ||||||||| |||||| ||||| | | || || ||||||| ||||| ||||| Sbjct 612815 TCCTTGTCCTGGATTTTCGCCTTGACGTTGTCG--ATCGTATCGGAGGACTCGACCTCGA 612872 Query 48684 CTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || || || || || || || || || || ||||| ||||| Sbjct 612873 GCGTGATTGTCTTGCCAGTAAGCGTCTTGACGAAAATTTGCAT 612915 Score = 93.3 bits (102), Expect = 4e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 48523 ATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTG 48582 ||| || ||||||||||| || ||||||||||||| | || | ||||| ||||| Sbjct 613504 ATGGAGCGTGCTCTCCTTCTGGATGTTGTAATCAGAGAGCGTGCGGCCATCCTCGAGCTG 613563 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 ||| || | | || | |||||||| || ||| | | ||||||||| || || Sbjct 613564 CTTGCCAGCAAAGATCAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGGATCTT 613623 Query 48643 CTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGT 48702 ||||| | | ||||| ||| | ||||| ||||| || ||||| || ||||| Sbjct 613624 GGCCTTGACATTATCGATGGTGTCGCTGGACTCGACCTCGAGCGTGATGGTCTTGCCGGT 613683 Query 48703 GAGAGTTTTCACAAAAATCTGCAT 48726 ||| || || ||||| |||||||| Sbjct 613684 GAGGGTCTTGACAAAGATCTGCAT 613707 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421248458444534