Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Auricularia_20auricula-judae_20[genbank_20GCA_5F002092955.1_202017- 04-17] 534 sequences; 43,569,032 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq57 86.0 6e-12 seq524 82.4 7e-11 >seq57 Length=599116 Score = 86.0 bits (94), Expect = 6e-12 Identities = 113/157 (72%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 || || ||||| || ||| |||| || | | |||||| || || || || || || ||| Sbjct 468263 TCTTCGAGCTGCTTGCCGGCAAAAATGAGGCGTTGCTGGTCGGGCGGGATGCCCTCCTTG 468322 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | || || ||||| || | ||| ||||| | | || || || | ||||||| Sbjct 468323 TCCTGGATCTTCGCCTTCACATTGTCGATGGTGTCCGAGGACTCCACCTCCAACGTGATG 468382 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 || || ||||| || || || |||||||||||||||| Sbjct 468383 GTCTTGCCAGTGAGTGTCTTGACAAAGATCTGCATGC 468419 >seq524 Length=649165 Score = 82.4 bits (90), Expect = 7e-11 Identities = 165/243 (68%), Gaps = 4/243 (2%) Strand=Plus/Plus Query 94769 AAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACG 94828 ||| ||| || || || | || |||| || | ||||| || || ||||| || | Sbjct 612905 AAAATTTGCATGCCACCACGCAGGCGCAGAACAAGGTGCAGCGTGGACTCCTTCTGGATA 612964 Query 94829 TTATAATCGCTCATAGTGTTGGAA--TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTT 94886 || |||||| || | || || ||||| || || || ||| | || || || | | Sbjct 612965 TTGTAATCGGACA--GCGTCCGACCGTCCTCGAGTTGCTTGCCGGCGAAAATCAAGCGCT 613022 Query 94887 GCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGT 94946 |||| || || || || || || || || | ||||| ||||||||| | | | |||| Sbjct 613023 GCTGGTCGGGCGGGATCCCCTCCTTATCCTGGATTTTCGCCTTGACGTTGTCAATCGTGT 613082 Query 94947 CAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCA 95006 | | | ||||| || | |||||||| || || || | || || ||||||||||||| Sbjct 613083 CCGAGGACTCGACTTCCAGGGTGATGGTCTTCCCGGTCAACGTCTTGACAAAGATCTGCA 613142 Query 95007 TGC 95009 ||| Sbjct 613143 TGC 613145 Score = 82.4 bits (90), Expect = 7e-11 Identities = 115/158 (73%), Gaps = 4/158 (3%) Strand=Plus/Plus Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 |||||| ||||| || || ||||||| | | ||||| || || || || || || || Sbjct 613552 ATCCTCGAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTT 613611 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGG--TCGACGTCAATCGTG 94969 ||| | || || |||||||| ||| ||||| || ||| ||||| || | |||| Sbjct 613612 GTCCTGGATCTTGGCCTTGACATTATCGATGGTGTC-GC-TGGACTCGACCTCGAGCGTG 613669 Query 94970 ATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||| || || || || || || |||||||||||||| Sbjct 613670 ATGGTCTTGCCGGTGAGGGTCTTGACAAAGATCTGCAT 613707 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448288207656240