Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Auricularia_20auricula-judae_20[genbank_20GCA_5F002092955.1_202017- 04-17] 534 sequences; 43,569,032 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq1 158 2e-34 seq218 138 2e-28 seq492 131 3e-26 seq531 129 9e-26 seq506 95.1 2e-15 >seq1 Length=964551 Score = 158 bits (174), Expect = 2e-34 Identities = 193/261 (74%), Gaps = 2/261 (1%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || ||||| ||||||| ||| | | || || |||||||| || ||||||||||| || || Sbjct 607563 GCCAAGCGCCATCGCAAGATTT-TGCGCGACAACATCCAGGGCATCACCAAGCCCGCCAT 607621 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||||| || || || || || || |||||| |||| || | |||| || |||| Sbjct 607622 CCGCCGTCTCGCGCGCCGCGGCGGTGTGAAGCGTATCTCGGGCCTCATCTACGAGGAGAC 607681 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | |||||||||||| ||| ||| |||| |||| | || ||| ||||| Sbjct 607682 CCGCGGCGTCCTCAAGATCTTCCTCGAGAACGTCATCCGTGATTCGGTCACCTACACCGA 607741 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| ||||| |||||||||||| || | || ||||||| || | || || || Sbjct 607742 GCACGCAAAACGCAAGACTGTCACCGCCCTCGACGTCGTCTACGCGCTCAAGCGCTCCGG 607801 Query 16672 CCGTAAGATTTATGGTTTTGG 16692 ||| | | | || ||||| || Sbjct 607802 CCGCACGCTCTACGGTTTCGG 607822 >seq218 Length=15987 Score = 138 bits (152), Expect = 2e-28 Identities = 155/205 (76%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| |||||||| |||| |||| || || || |||||||| || ||||||||||| || | Sbjct 3344 CGCCAAGCGTCACCGCAAGATC-CTCCGCGACAACATCCAGGGCATCACCAAGCCCGCCA 3286 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||| || || || ||||| || || || |||||| |||| || | | || || |||| Sbjct 3285 TCCGCCGCCTCGCCCGTCGCGGCGGTGTGAAGCGTATCTCGGGCCTCATTTACGAGGAGA 3226 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 || | || | |||||||||||| ||| ||| |||| || || || ||| |||| Sbjct 3225 CCCGCGGCGTGCTCAAGATCTTCCTCGAGAACGTCATCCGCGACTCTGTCACCTACACCG 3166 Query 16611 AGCACGCTAAACGTAAGACTGTCAC 16635 ||||||| || || ||||||||||| Sbjct 3165 AGCACGCGAAGCGCAAGACTGTCAC 3141 >seq492 Length=74104 Score = 131 bits (144), Expect = 3e-26 Identities = 166/226 (73%), Gaps = 2/226 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| ||||| || |||| |||| || || || |||||||| || ||||| ||||| || | Sbjct 41205 CGCCAAGCGCCACCGCAAGATC-CTCCGCGACAACATCCAGGGCATCACGAAGCCCGCGA 41147 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||| || || || || || || || || |||||| |||| || || |||| || |||| Sbjct 41146 TCCGCCGCCTCGCGCGCCGCGGCGGCGTGAAGCGTATCTCGGGTCTGATCTACGAGGAGA 41087 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 || | || | |||||||||||| ||| ||| |||| || | || || |||| Sbjct 41086 CGCGCGGGGTGCTCAAGATCTTCCTCGAGAACGTCATCCGCGACTCGGTCACGTACACCG 41027 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGC 16656 ||||||| || || ||||| |||||| || | || ||||||| || Sbjct 41026 AGCACGCCAAGCGCAAGACCGTCACCGCCCTCGACGTCGTCTACGC 40981 >seq531 Length=137184 Score = 129 bits (142), Expect = 9e-26 Identities = 153/205 (75%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGC-AGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 |||||||||||| ||| ||||| || || || |||||||| || ||||| ||||| || | Sbjct 7272 CGCTAAGCGTCACCGCAAGATC-CTCCGCGACAACATCCAGGGCATCACTAAGCCCGCCA 7330 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||| || || || ||||| || || || |||||| |||| || | |||| || |||| Sbjct 7331 TCCGCCGCCTCGCCCGTCGCGGCGGCGTGAAGCGTATCTCGGGCCTCATCTACGAGGAGA 7390 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 || | || | |||||||||||| ||| ||| |||| || | || ||| |||| Sbjct 7391 CCCGCGGCGTGCTCAAGATCTTCCTCGAGAACGTCATCCGCGACTCCGTCACCTACACCG 7450 Query 16611 AGCACGCTAAACGTAAGACTGTCAC 16635 ||||||| || || ||||| || || Sbjct 7451 AGCACGCGAAGCGCAAGACCGTGAC 7475 >seq506 Length=170217 Score = 95.1 bits (104), Expect = 2e-15 Identities = 124/172 (72%), Gaps = 0/172 (0%) Strand=Plus/Minus Query 16465 CATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCG 16524 ||| || || ||||| ||||| || ||||| || || || || || || || || ||||| Sbjct 22990 CATTCAGGGCATCACGAAGCCTGCCATCCGCCGCCTTGCGCGCCGCGGCGGCGTGAAGCG 22931 Query 16525 TGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGT 16584 |||| || | |||| || |||| || | || | |||||||||||| ||| ||| Sbjct 22930 CATCTCGGGGCTCATCTACGAGGAGACCCGCGGCGTGCTCAAGATCTTCCTCGAGAACGT 22871 Query 16585 TATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACC 16636 |||| || | || ||| ||||||||||| || || ||||| |||||| Sbjct 22870 CATCCGCGACTCGGTCACCTACACCGAGCACGCCAAGCGCAAGACCGTCACC 22819 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79074711760062