Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Auricularia_20auricula-judae_20[genbank_20GCA_5F002092955.1_202017- 04-17] 534 sequences; 43,569,032 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq524 123 2e-23 seq57 118 9e-22 >seq524 Length=649165 Score = 123 bits (136), Expect = 2e-23 Identities = 149/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| |||||||| || ||||||| | ||||| ||||| || Sbjct 613143 ATGCAGATCTTTGTCAAGACGTTGACCGGGAAGACCATCACCCTGGAAGTCGAGTCCTCG 613084 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || || | ||| |||||| || || || ||||| || || ||||| Sbjct 613083 GACACGATTGACAACGTCAAGGCGAAAATCCAGGATAAGGAGGGGATCCCGCCCGACCAG 613024 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | ||||| |||||||| ||| | || || | ||| || || |||||||||| Sbjct 613023 CAGCGCTTGATTTTCGCCGGCAAGCAACTCGAGGACGGTCGGACGCTGTCCGATTACAAT 612964 Query 25179 ATTCAAAAAGAATCCACGCTACA 25201 || || || || |||||||| || Sbjct 612963 ATCCAGAAGGAGTCCACGCTGCA 612941 >seq57 Length=599116 Score = 118 bits (130), Expect = 9e-22 Identities = 157/216 (73%), Gaps = 8/216 (4%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||||||||| || ||||| | ||||| || | ||||| | || || |||||||| Sbjct 467904 ATGCAAATATTCGTTAAGACACTCACCGGCAAGACGATCACGCTGGAGGTCGAGTCGTCC 467845 Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 ||||| ||||| |||| |||| || | || ||||| || || ||||||||||| Sbjct 467844 GACACGATCGACAACGTCA---AAGCGAAGATCCAG-GACAAGGAGGGCATTCCACCTGA 467789 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||| ||||| |||| ||||||||||| || | || |||| |||||| | ||||| Sbjct 467788 CCAGCAGCGCCTTATCTTTGCCGGCAAGCAGCTCGAGGATGGCCGCACTCTTTCGGATTA 467729 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||| || || || || || || || ||| | || || Sbjct 467728 CAACATCCAGAAGGAGTCGACACTGCATCTCGTCCT 467693 Score = 100 bits (110), Expect = 2e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| | || || || ||||||| | || |||||||| || Sbjct 468417 ATGCAGATCTTTGTCAAGACACTCACTGGCAAGACCATCACGTTGGAGGTGGAGTCCTCG 468358 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| ||||| ||||| || ||| ||||| || || || || || ||||| Sbjct 468357 GACACCATCGACAATGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCGCCCGACCAG 468298 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 || || | |||||||||||||| || | ||||| | ||||||| | || ||||| Sbjct 468297 CAACGCCTCATTTTTGCCGGCAAGCAGCTCGAAGACGGTCGCACTCTCTCGGACTACAAC 468238 Query 25179 ATTCAAAAAGAATCCACGCTACA 25201 ||||| || || || || || || Sbjct 468237 ATTCAGAAGGAGTCGACTCTCCA 468215 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433325179847210