Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Auricularia_20auricula-judae_20[genbank_20GCA_5F002092955.1_202017- 04-17] 534 sequences; 43,569,032 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq57 131 1e-25 seq524 111 1e-19 >seq57 Length=599116 Score = 131 bits (144), Expect = 1e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || ||||| || | ||||| || ||| |||| || || || || | || Sbjct 467904 ATGCAAATATTCGTTAAGACACTCACCGGCAAGACGATCACGCTGGAGGTCGAGTCGTCC 467845 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| | ||||| || || || ||||||||||| |||||||| || || Sbjct 467844 GACACGATCGACAACGTCAAAGCGAAGATCCAGGACAAGGAGGGCATTCCACCTGACCAG 467785 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || ||||| ||||||||||| ||| | |||||| |||||| | || ||||||||| Sbjct 467784 CAGCGCCTTATCTTTGCCGGCAAGCAGCTCGAGGATGGCCGCACTCTTTCGGATTACAAC 467725 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || || || || || || | ||| | || | || ||||||| || Sbjct 467724 ATCCAGAAGGAGTCGACACTGCATCTCGTCCTTCGTCTGCGCGGCGG 467678 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | || || || ||| |||| | ||||| || | || Sbjct 467676 ATGCAGATCTTCGTCAAGACGCTGACTGGCAAGACGATCACGTTGGAAGTTGAGTCGTCC 467617 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || | |||| || || || || |||||||| || || ||||| || Sbjct 467616 GACACGATTGATAACGTCAAGGCGAAGATCCAGGATAAGGAGGGCATCCCTCCCGACCAG 467557 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || || |||||||| ||||| ||||| |||||| | || ||||||||| Sbjct 467556 CAGCGCCTCATCTTCGCCGGCAAGCAGTTGGAGGACGGCCGCACTCTTTCGGATTACAAC 467497 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || || || || ||||| | ||| | || |||| ||||| || ||| Sbjct 467496 ATCCAGAAGGAGTCCACGCTCCATCTCGTCCTGCGCTTGCGTGGCGGT 467449 Score = 98.7 bits (108), Expect = 8e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || || | || || || || |||| | || ||||| || | Sbjct 468417 ATGCAGATCTTTGTCAAGACACTCACTGGCAAGACCATCACGTTGGAGGTGGAGTCCTCG 468358 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| || | || || || || ||||||||||| || || ||||| || Sbjct 468357 GACACCATCGACAATGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCGCCCGACCAG 468298 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||||| || || ||||||||||| ||| | || || ||||| |||| || |||||| Sbjct 468297 CAACGCCTCATTTTTGCCGGCAAGCAGCTCGAAGACGGTCGCACTCTCTCGGACTACAAC 468238 Query 22399 ATTCAAAAAGAATCCAC 22415 ||||| || || || || Sbjct 468237 ATTCAGAAGGAGTCGAC 468221 >seq524 Length=649165 Score = 111 bits (122), Expect = 1e-19 Identities = 139/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || || | ||||| || || |||| || || || || ||| | Sbjct 613707 ATGCAGATCTTTGTCAAGACCCTCACCGGCAAGACCATCACGCTCGAGGTCGAGTCCAGC 613648 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || |||| || || || ||||||||||| || || ||||| || Sbjct 613647 GACACCATCGATAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCGCCCGACCAG 613588 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || ||||| ||||| ||| | |||||| |||||| |||| ||||||||| Sbjct 613587 CAGCGCCTGATCTTTGCTGGCAAGCAGCTCGAGGATGGCCGCACGCTCTCTGATTACAAC 613528 Query 22399 ATTCAAAAAGA 22409 || || || || Sbjct 613527 ATCCAGAAGGA 613517 Score = 102 bits (112), Expect = 7e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | || || || ||| |||| || || || || | || Sbjct 613422 ATGCAGATCTTCGTGAAGACGCTGACGGGCAAGACGATCACCCTGGAGGTCGAGAGCAGT 613363 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || || |||| || || || ||||||||||| || || ||||| || Sbjct 613362 GACACTATCGATAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCGCCCGACCAG 613303 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || || |||||||| ||| ||||||| ||||| ||||||| |||||| Sbjct 613302 CAGCGTCTGATCTTCGCCGGCAAGCAGCTAGAGGACGGTCGCACTCTCTCCGACTACAAC 613243 Query 22399 ATTCAAAAAGA 22409 ||||| || || Sbjct 613242 ATTCAGAAGGA 613232 Score = 96.9 bits (106), Expect = 3e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||| || || || | || || || || |||| || || || || || || Sbjct 612915 ATGCAAATTTTCGTCAAGACGCTTACTGGCAAGACAATCACGCTCGAGGTCGAGTCCTCC 612856 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | ||| | |||| ||||| || |||||||| || || || ||||| || Sbjct 612855 GATACGATCGACAACGTCAAGGCGAAAATCCAGGACAAGGAAGGAATCCCGCCCGACCAG 612796 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || |||||||| || |||||||| || | ||||| ||||| | ||||| ||||| Sbjct 612795 CAGCGTCTTATTTTCGCCGGCAAGCAACTCGAGGACGGGCGCACGCTTTCCGACTACAAT 612736 Query 22399 ATTCAAAAAGA 22409 || || || || Sbjct 612735 ATCCAGAAGGA 612725 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || || || ||||| || || |||| || ||||| || || | Sbjct 613143 ATGCAGATCTTTGTCAAGACGTTGACCGGGAAGACCATCACCCTGGAAGTCGAGTCCTCG 613084 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| | |||| ||||| || || |||||||| || || ||||| || Sbjct 613083 GACACGATTGACAACGTCAAGGCGAAAATCCAGGATAAGGAGGGGATCCCGCCCGACCAG 613024 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || | || || |||||||| || | ||||| || || | ||||||||||| Sbjct 613023 CAGCGCTTGATTTTCGCCGGCAAGCAACTCGAGGACGGTCGGACGCTGTCCGATTACAAT 612964 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || || || || ||||| | || | ||| |||| |||| || || Sbjct 612963 ATCCAGAAGGAGTCCACGCTGCACCTTGTTCTGCGCCTGCGTGGTGG 612917 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419725268357710