Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Auricularia_20auricula-judae_20[genbank_20GCA_5F002092955.1_202017- 04-17] 534 sequences; 43,569,032 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq124 107 4e-18 seq101 104 5e-17 seq50 91.5 3e-13 >seq124 Length=448922 Score = 107 bits (118), Expect = 4e-18 Identities = 115/152 (76%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 |||||||| || | |||||||| ||| ||||| | ||||||||||||||||| || | Sbjct 289397 TCGAAGAAGTTCGTCTTGCCCTGCAGCGAGATCATGTCCATGAAGTCGAAGGGATTCGAC 289338 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682 | ||||| ||||| | ||| ||||| |||| || |||||| || || ||||| | Sbjct 289337 GAGTTGTAGTGCTTCTCGTTGCCGAGTGCGACGAGGAGGCGGTCCGCGACGAACTCGATG 289278 Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAAT 251714 ||||| |||||| | ||||||||||| || Sbjct 289277 TACTGGTTCATCAGCTTCGAGTTCATGCCGAT 289246 >seq101 Length=461416 Score = 104 bits (114), Expect = 5e-17 Identities = 114/152 (75%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 |||||||| || | |||||||| ||| ||||| | ||||||||||||||||| || | Sbjct 404215 TCGAAGAAGTTCGTCTTGCCCTGCAGCGAGATCATGTCCATGAAGTCGAAGGGATTCGAC 404156 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682 | ||||| ||||| | ||| || || |||| | |||||| || || ||||| | | Sbjct 404155 GAGTTGTAGTGCTTCTCGTTGCCGAGCGCGACGAGCAGGCGGTCGGCGACGAACTCGATA 404096 Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAAT 251714 ||||| ||||| || ||||||||||| || Sbjct 404095 TACTGGTTCATCAATTTCGAGTTCATGCCGAT 404064 >seq50 Length=81412 Score = 91.5 bits (100), Expect = 3e-13 Identities = 133/186 (72%), Gaps = 3/186 (2%) Strand=Plus/Minus Query 280172 TGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGAC 280231 |||| | || ||||| || | || ||||| || || |||| |||| | |||||| | Sbjct 4913 TGTCCTCGGCCCCAACGGCTCCGGCAAGTCGACGCTCGTCAAGCTCCTCATTGGCGACAT 4854 Query 280232 CCAGGCCACTGAGGG--GTCCGTT-TGGAAGCATCCCAACATGCGGATGGCTTACGTCGC 280288 || | | |||| || | | |||||||| |||||| || || | |||||||| Sbjct 4853 GGAGCCGAACAAGGGCGGTGAGATCTGGAAGCACCCCAACTTGGTCATTGGCTACGTCGC 4794 Query 280289 TCAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATTCA 280348 ||||||||| |||||||||||||| || ||||| |||| ||| || | | ||||| | Sbjct 4793 TCAGCACGCGTTCCACCACATCGACAAGCACCTCGACAAGACGCCGCTCGAGTACATGCT 4734 Query 280349 GTGGCG 280354 ||||| Sbjct 4733 CTGGCG 4728 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027829767669094