Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Auricularia_20auricula-judae_20[genbank_20GCA_5F002092955.1_202017- 04-17] 534 sequences; 43,569,032 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq524 91.5 1e-13 seq57 87.8 1e-12 >seq524 Length=649165 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/212 (70%), Gaps = 1/212 (0%) Strand=Plus/Plus Query 33918 CACC-AGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGCTCGTCGT 33976 |||| ||||| ||||||||||||||||| ||||||||||| | | || | || | Sbjct 613497 CACCGAGATGGAGCGTGCTCTCCTTCTGGATGTTGTAATCAGAGAGCGTGCGGCCATCCT 613556 Query 33977 CCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCTTTGTCCA 34036 | | |||||||| ||||| |||||||||||||| || ||| | || ||| |||||| Sbjct 613557 CGAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCT 613616 Query 34037 TAATTTTTTGCTTAATGGAACTCACACTATCAGTAGATTCGCATTCGACCGTTATTGTTT 34096 || || ||| | | | | || | || ||| |||| ||| || || | Sbjct 613617 GGATCTTGGCCTTGACATTATCGATGGTGTCGCTGGACTCGACCTCGAGCGTGATGGTCT 613676 Query 34097 TTCCGGTTAGTGTTTTCACAAAGATTTGCATT 34128 | ||||| || || || |||||||| |||||| Sbjct 613677 TGCCGGTGAGGGTCTTGACAAAGATCTGCATT 613708 Score = 84.2 bits (92), Expect = 2e-11 Identities = 89/115 (77%), Gaps = 2/115 (2%) Strand=Plus/Plus Query 33922 AGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCA-ATTGTCGCTCGTCGTCCAA 33980 || || |||||||||||||||||||||||||| || | | | || || |||| || | Sbjct 613217 AGGTGGAGCGTGCTCTCCTTCTGAATGTTGTAGTCGGAGAGAGTG-CGACCGTCCTCTAG 613275 Query 33981 TTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCTTTGTCC 34035 ||||||||||| || ||||| |||||||| || ||| | || ||| |||||| Sbjct 613276 CTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCC 613330 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/207 (70%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 33922 AGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGT-CGCTCGTCGTCCAA 33980 ||||| ||||||||||||||||| || ||||| || | || || ||| |||| || | Sbjct 612710 AGATGCAGCGTGCTCTCCTTCTGGATATTGTAGTC-GGAAAGCGTGCGCCCGTCCTCGAG 612768 Query 33981 TTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCTTTGTCCATAAT 34040 |||||||||||| || || || |||||||| || ||| | | || |||||| || Sbjct 612769 TTGCTTGCCGGCGAAAATAAGACGCTGCTGGTCGGGCGGGATTCCTTCCTTGTCCTGGAT 612828 Query 34041 TTTTTGCTTAATGGAACTCACACTATCAGTAGATTCGCATTCGACCGTTATTGTTTTTCC 34100 ||| ||| | | | |||| | || ||| |||| ||| ||||| || || Sbjct 612829 TTTCGCCTTGACGTTGTCGATCGTATCGGAGGACTCGACCTCGAGCGTGATTGTCTTGCC 612888 Query 34101 GGTTAGTGTTTTCACAAAGATTTGCAT 34127 || || || || || || |||||||| Sbjct 612889 AGTAAGCGTCTTGACGAAAATTTGCAT 612915 >seq57 Length=599116 Score = 87.8 bits (96), Expect = 1e-12 Identities = 90/115 (78%), Gaps = 2/115 (2%) Strand=Plus/Plus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 ||| || | || ||||| || ||||| |||||| ||||||||| ||||||||||| | Sbjct 467449 ACCGCCACGCAAGCGCAGGACGAGATGGAGCGTGGACTCCTTCTGGATGTTGTAATCCGA 467508 Query 33960 CA-ATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 | | || || |||| ||||| ||||||||||| || || ||||||||||| || Sbjct 467509 AAGAGTG-CGGCCGTCCTCCAACTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTC 467562 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397059815868268