Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Auricularia_20auricula-judae_20[genbank_20GCA_5F002092955.1_202017- 04-17] 534 sequences; 43,569,032 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq524 141 1e-28 seq57 125 8e-24 >seq524 Length=649165 Score = 141 bits (156), Expect = 1e-28 Identities = 150/198 (76%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 42012 GTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCA 42071 ||||||||||| || || |||||||||| || || || | || || |||||||| ||| Sbjct 613511 GTGCTCTCCTTCTGGATGTTGTAATCAGAGAGCGTGCGGCCATCCTCGAGCTGCTTGCCA 613570 Query 42072 GCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTG 42131 || || || || ||||||||||||| || | || |||||||||| ||| || ||| Sbjct 613571 GCAAAGATCAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTG 613630 Query 42132 AGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTC 42191 | | | | |||||||| || || || |||| ||||||||| ||||| || || ||| Sbjct 613631 ACATTATCGATGGTGTCGCTGGACTCGACCTCGAGCGTGATGGTCTTGCCGGTGAGGGTC 613690 Query 42192 TTTACAAAGATTTGCATT 42209 || |||||||| |||||| Sbjct 613691 TTGACAAAGATCTGCATT 613708 Score = 131 bits (144), Expect = 2e-25 Identities = 158/211 (75%), Gaps = 3/211 (1%) Strand=Plus/Plus Query 42000 ACCAA-ATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 42058 ||||| ||||| ||||||||||| || |||||||| || | || || ||| |||| || Sbjct 612706 ACCAAGATGCAGCGTGCTCTCCTTCTGGATATTGTAGTCGGAAAGCGTGCGCCCGTCCTC 612765 Query 42059 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCAT 42118 || ||||| || ||||| || || ||||||||||||| || | | ||||||||| Sbjct 612766 GAGTTGCTTGCCGGCGAAAATAAGACGCTGCTGGTCGGGCGGGATTCCTTCCTTGTCCTG 612825 Query 42119 GATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTT 42177 |||||| |||| ||| | | | ||| ||| || || || |||| |||||| || | Sbjct 612826 GATTTTCGCCTTGA-CGTTGTCGATCGTATCGGAGGACTCGACCTCGAGCGTGATTGTCT 612884 Query 42178 TGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 |||| || |||||||| || || |||||||| Sbjct 612885 TGCCAGTAAGCGTCTTGACGAAAATTTGCAT 612915 Score = 125 bits (138), Expect = 8e-24 Identities = 146/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 42012 GTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCA 42071 ||||||||||| ||||| ||||| || | ||||| || |||| ||||||||||| || Sbjct 613226 GTGCTCTCCTTCTGAATGTTGTAGTCGGAGAGAGTGCGACCGTCCTCTAGCTGCTTGCCG 613285 Query 42072 GCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTG 42131 ||||| || || ||||||||||||| || | || |||||||||| ||| || ||| Sbjct 613286 GCGAAGATCAGACGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTG 613345 Query 42132 AGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTC 42191 | | | | ||||| || || || || | ||||| || |||||||| |||||| Sbjct 613346 ACATTATCGATAGTGTCACTGCTCTCGACCTCCAGGGTGATCGTCTTGCCCGTCAGCGTC 613405 Query 42192 TTTACAAAGATTTGCAT 42208 || || ||||| ||||| Sbjct 613406 TTCACGAAGATCTGCAT 613422 Score = 113 bits (124), Expect = 5e-20 Identities = 149/204 (73%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 42006 TGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGC 42065 |||| ||| |||||| || ||||||||||| | ||| ||||| |||| || || ||| Sbjct 612941 TGCAGCGTGGACTCCTTCTGGATATTGTAATCGGACAGCGTCCGACCGTCCTCGAGTTGC 613000 Query 42066 TTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTT 42125 || || ||||| || | ||||||||||||| || | | |||||| ||| |||||| Sbjct 613001 TTGCCGGCGAAAATCAAGCGCTGCTGGTCGGGCGGGATCCCCTCCTTATCCTGGATTTTC 613060 Query 42126 TGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGT 42184 |||| ||| | | | |||||| || || || || | |||||||| || || || Sbjct 613061 GCCTTGA-CGTTGTCAATCGTGTCCGAGGACTCGACTTCCAGGGTGATGGTCTTCCCGGT 613119 Query 42185 TAGCGTCTTTACAAAGATTTGCAT 42208 | |||||| |||||||| ||||| Sbjct 613120 CAACGTCTTGACAAAGATCTGCAT 613143 >seq57 Length=599116 Score = 125 bits (138), Expect = 8e-24 Identities = 165/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 41980 GACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAG 42039 |||| || | || |||| || | ||| | ||| |||||| || || |||||||| | Sbjct 467448 GACCGCCACGCAAGCGCAGGACGAGATGGAGCGTGGACTCCTTCTGGATGTTGTAATCCG 467507 Query 42040 CCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTG 42099 ||||| || |||| || | |||||| || ||||| ||||| ||||||||||||| | Sbjct 467508 AAAGAGTGCGGCCGTCCTCCAACTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGAG 467567 Query 42100 GCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 42159 | | || |||||| ||| ||| || |||| | | | ||||||| ||| || | Sbjct 467568 GGATGCCCTCCTTATCCTGGATCTTCGCCTTGACGTTATCAATCGTGTCGGACGACTCAA 467627 Query 42160 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 | || | |||||| || ||||| || |||||||| || ||||| ||||| Sbjct 467628 CTTCCAACGTGATCGTCTTGCCAGTCAGCGTCTTGACGAAGATCTGCAT 467676 Score = 123 bits (136), Expect = 3e-23 Identities = 152/205 (74%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 42005 ATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTG 42064 ||||| ||| |||||| || || |||||||| | ||||| || | || || ||||| Sbjct 467701 ATGCAGTGTCGACTCCTTCTGGATGTTGTAATCCGAAAGAGTGCGGCCATCCTCGAGCTG 467760 Query 42065 CTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTT 42124 ||| || || || || || ||||||||||| | ||| | || |||||||||| ||| || Sbjct 467761 CTTGCCGGCAAAGATAAGGCGCTGCTGGTCAGGTGGAATGCCCTCCTTGTCCTGGATCTT 467820 Query 42125 TTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCG 42183 ||||| ||| | | | ||||||| ||| || || || | |||||| || ||||| | Sbjct 467821 CGCTTTGA-CGTTGTCGATCGTGTCGGACGACTCGACCTCCAGCGTGATCGTCTTGCCGG 467879 Query 42184 TTAGCGTCTTTACAAAGATTTGCAT 42208 | || ||||| || || |||||||| Sbjct 467880 TGAGTGTCTTAACGAATATTTGCAT 467904 Score = 111 bits (122), Expect = 2e-19 Identities = 142/193 (74%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || || || || || | ||||| || |||| || |||||||| || ||||| Sbjct 467998 CTCCTTCTGGATGTTATAGTCCGAAAGAGTGCGACCGTCTTCGAGCTGCTTGCCGGCGAA 468057 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 ||||| ||||||||||| | || | || ||||||||| ||| || || | ||| Sbjct 468058 AATGAGGCGCTGCTGGTCTGGCGGGATGCCTTCCTTGTCCTGGATCTTCGCCTTCA-CGT 468116 Query 42137 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 42195 | | | ||||| || ||||| || | ||||||||| |||||||| || ||||| | Sbjct 468117 TGTCGATGGTGTCCGAAGACTCCACCTCCAGCGTGATGGTCTTGCCCGTCAGTGTCTTGA 468176 Query 42196 CAAAGATTTGCAT 42208 | ||||||||||| Sbjct 468177 CGAAGATTTGCAT 468189 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543209174054560