Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Auricularia_20auricula-judae_20[genbank_20GCA_5F002092955.1_202017- 04-17] 534 sequences; 43,569,032 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq57 116 4e-21 seq524 102 8e-17 seq190 82.4 8e-11 >seq57 Length=599116 Score = 116 bits (128), Expect = 4e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 ||||| || | | ||| || || || | ||||| || || ||||||||||| || | | Sbjct 468191 CCGCCACGGAGACGAAGGACAAGGTGGAGAGTCGACTCCTTCTGAATGTTGTAGTCCGAG 468250 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | ||||| ||||||| ||||||||||||||| ||||||| || ||||||||||| || Sbjct 468251 AGAGTGCGACCGTCTTCGAGCTGCTTGCCGGCAAAAATGAGGCGTTGCTGGTCGGGCGGG 468310 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 || || || || || || || || ||| ||| || | || || || ||||| Sbjct 468311 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCACATTGTCGATGGTGTCCGAGGACTCCACC 468370 Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | || | ||||||||| || | || || || || || ||||| Sbjct 468371 TCCAACGTGATGGTCTTGCCAGTGAGTGTCTTGACAAAGATCTGCAT 468417 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 |||||| ||||| | || || ||||| | ||| || || || || ||||||||||| | Sbjct 467449 ACCGCCACGCAAGCGCAGGACGAGATGGAGCGTGGACTCCTTCTGGATGTTGTAATCCGA 467508 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | ||||| |||| || | |||||||||||| | ||||| ||||||||||||||||| Sbjct 467509 AAGAGTGCGGCCGTCCTCCAACTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGAGG 467568 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 || || || || || || || || ||| || || | || || | || || Sbjct 467569 GATGCCCTCCTTATCCTGGATCTTCGCCTTGACGTTATCAATCGTGTCGGACGACTCAAC 467628 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||| | || | |||||||| |||| || || ||||| || ||||| Sbjct 467629 TTCCAACGTGATCGTCTTGCCAGTCAGCGTCTTGACGAAGATCTGCAT 467676 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 |||||||||| | ||| || ||||| | ||||| || || || ||||||||||| | Sbjct 467678 CCGCCGCGCAGACGAAGGACGAGATGCAGTGTCGACTCCTTCTGGATGTTGTAATCCGAA 467737 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | ||||| | || || ||||||||||||||| | || || ||||||||||| || ||| Sbjct 467738 AGAGTGCGGCCATCCTCGAGCTGCTTGCCGGCAAAGATAAGGCGCTGCTGGTCAGGTGGA 467797 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCAC 64395 || || || || || || | | || ||||| || || | || || | || || Sbjct 467798 ATGCCCTCCTTGTCCTGGA-TCTTCGCTTTGACGTTGTCGATCGTGTCGGACGACTCGAC 467856 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | || | ||||||||||| | || || ||||| |||||||| Sbjct 467857 CTCCAGCGTGATCGTCTTGCCGGTGAGTGTCTTAACGAATATTTGCAT 467904 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 ||||| || || || ||||| || || | | ||||| ||||||| |||||||||||| Sbjct 467993 GTCGACTCCTTCTGGATGTTATAGTCCGAAAGAGTGCGACCGTCTTCGAGCTGCTTGCCG 468052 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 || ||||||| ||||||||||| || || || ||||| || || || || || ||| Sbjct 468053 GCGAAAATGAGGCGCTGCTGGTCTGGCGGGATGCCTTCCTTGTCCTGGATCTTCGCCTTC 468112 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 || || | || || | ||||| || | || | ||||||||| |||| || Sbjct 468113 ACGTTGTCGATGGTGTCCGAAGACTCCACCTCCAGCGTGATGGTCTTGCCCGTCAGTGTC 468172 Query 64427 TTTACGAAAATTTGCAT 64443 || ||||| |||||||| Sbjct 468173 TTGACGAAGATTTGCAT 468189 >seq524 Length=649165 Score = 102 bits (112), Expect = 8e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 64253 TCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAA 64312 || || || || ||||| || | | |||||| |||| || || ||||||||||| || Sbjct 612725 TCCTTCTGGATATTGTAGTCGGAAAGCGTGCGCCCGTCCTCGAGTTGCTTGCCGGCGAAA 612784 Query 64313 ATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACC 64372 || || |||||||||||||| || |||||||| || || || ||||| ||| || Sbjct 612785 ATAAGACGCTGCTGGTCGGGCGGGATTCCTTCCTTGTCCTGGATTTTCGCCTTGACGTTG 612844 Query 64373 TCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACG 64432 || | ||||| || || || || | || | |||||||| || | || || ||| Sbjct 612845 TCGATCGTATCGGAGGACTCGACCTCGAGCGTGATTGTCTTGCCAGTAAGCGTCTTGACG 612904 Query 64433 AAAATTTGCAT 64443 ||||||||||| Sbjct 612905 AAAATTTGCAT 612915 Score = 96.9 bits (106), Expect = 3e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 64253 TCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAA 64312 || || ||||||||||| || | || ||||| |||| || |||||||||||||| | Sbjct 613232 TCCTTCTGAATGTTGTAGTCGGAGAGAGTGCGACCGTCCTCTAGCTGCTTGCCGGCGAAG 613291 Query 64313 ATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACC 64372 || || |||||||||||||| || || || || || || || || || ||| ||| Sbjct 613292 ATCAGACGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTA 613351 Query 64373 TCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACG 64432 || | || |||| | || || || | || | |||||||| |||| || || ||| Sbjct 613352 TCGATAGTGTCACTGCTCTCGACCTCCAGGGTGATCGTCTTGCCCGTCAGCGTCTTCACG 613411 Query 64433 AAAATTTGCAT 64443 || || ||||| Sbjct 613412 AAGATCTGCAT 613422 Score = 95.1 bits (104), Expect = 1e-14 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 64253 TCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAA 64312 || || || ||||||||||| | || ||||| | || || ||||||||||| ||| | Sbjct 613517 TCCTTCTGGATGTTGTAATCAGAGAGCGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAG 613576 Query 64313 ATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACC 64372 || || |||||||||||||| || || || || || || || || || ||| ||| Sbjct 613577 ATCAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTA 613636 Query 64373 TCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACG 64432 || | || || | || || || || | || | |||||||||||| | || || || Sbjct 613637 TCGATGGTGTCGCTGGACTCGACCTCGAGCGTGATGGTCTTGCCGGTGAGGGTCTTGACA 613696 Query 64433 AAAATTTGCATT 64444 || || |||||| Sbjct 613697 AAGATCTGCATT 613708 Score = 89.7 bits (98), Expect = 5e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || || || | ||| || || || || || |||||||| | | || || |||| Sbjct 612932 AGAACAAGGTGCAGCGTGGACTCCTTCTGGATATTGTAATCGGACAGCGTCCGACCGTCC 612991 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || || ||||||||||| |||| | |||||||||||||| || || || || || || Sbjct 612992 TCGAGTTGCTTGCCGGCGAAAATCAAGCGCTGCTGGTCGGGCGGGATCCCCTCCTTATCC 613051 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || ||||| ||| || || | || || || || ||||| | || | |||| Sbjct 613052 TGGATTTTCGCCTTGACGTTGTCAATCGTGTCCGAGGACTCGACTTCCAGGGTGATGGTC 613111 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || |||||||| || || || || || ||||| Sbjct 613112 TTCCCGGTCAACGTCTTGACAAAGATCTGCAT 613143 >seq190 Length=372578 Score = 82.4 bits (90), Expect = 8e-11 Identities = 83/108 (77%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 ||| || ||||| | ||||| ||||| || |||||||| || | || ||||| |||| Sbjct 156974 AAGGACCAGATGCAGAGTCGACTCTTTCTGGATGTTGTAGTCCGAGAGAGTGCGGCCGTC 156915 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAAT 64338 || |||||||||||||| | || || ||||||||||| || || || Sbjct 156914 CTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGCGGGAT 156867 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499641464870960