Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Auricularia_20auricula-judae_20[genbank_20GCA_5F002092955.1_202017- 04-17] 534 sequences; 43,569,032 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq101 141 9e-29 seq524 131 2e-25 seq57 105 6e-18 seq379 82.4 7e-11 >seq101 Length=461416 Score = 141 bits (156), Expect = 9e-29 Identities = 354/531 (67%), Gaps = 25/531 (5%) Strand=Plus/Plus Query 47059 TCGAGAGCATGCCCTGCGT---GCGCAGAAAGGCCGAGTGGGCCATGAAGTACATTGAAA 47115 |||||| ||| || ||| | ||||| ||||||||||||| || | || | Sbjct 403717 TCGAGACCATCCCGTGCATCAAGCGCA---AGGCCGAGTGGGCGCTGCGCTGGAT---AT 403770 Query 47116 ACGAAAACGTC---ACTCTGGCCGAACGTTTGATCGCTTTCGCCATCGTCGAGGGCGTCT 47172 ||| || | | ||| | | ||| || | ||||| |||||| |||||||||| | | Sbjct 403771 CCGACAAGGACTCGACTTTCGGCGAGCGCCTCATCGCCTTCGCCGCCGTCGAGGGCATTT 403830 Query 47173 TCTTCTCGGGCAGCTTTGCGGCGATATTTTACATGAAAACCAAAGGAGTTATGCCCGGCC 47232 ||||| ||| ||| ||| | || || | | || | || | ||||| |||| Sbjct 403831 TCTTCAGCGGCTCCTTCGCGTCCATCTTCTGGCTCAAGAAGCGCGGCCTGATGCCGGGCC 403890 Query 47233 TCACGTTTAGCAACGAGCTAATCTCGAGAGACGAAGGCCTGCACACCAACTTTGCCTG-- 47290 |||| || ||||||||| |||||| | ||||| ||| |||||||| |||| ||||| Sbjct 403891 TCACCTTCTCCAACGAGCTCATCTCGCGCGACGAGGGCATGCACACCGACTTCGCCTGCT 403950 Query 47291 -TCTCTACT-ACAACACTAGAGTCGATCAAAAG-TTGGACGTGCCCACCGTCAGCGACAT 47347 |||| || || | | || |||| | | || ||||||| || || Sbjct 403951 TGCTCTTCTCGCATCTC------CG--CAAACGCCCGCACCCCGACACCGTCCGCACGAT 404002 Query 47348 GTTTGCCGAAGCCGTCGCCATTGAGATGGAGTTTTTCGCCGAGGCTCTGCCCGAATCTTT 47407 | | || ||||| || ||| |||||| || |||| || || |||| || | Sbjct 404003 CATCACGGAGGCCGTGAAGATCGAGCAGGAGTTCCTCACCGACGCGCTCCCCGTCTCGCT 404062 Query 47408 AGTGGGAATGAACGCGGAGATGATGAGAAAGTACATCGAATTTGTCGCCGACCGCCTGCT 47467 | || |||||| || | |||||| |||| ||||| || ||||||||||||||||| Sbjct 404063 CATCGGCATGAACTCGAAATTGATGAACCAGTATATCGAGTTCGTCGCCGACCGCCTGCT 404122 Query 47468 CGTTCAGCTAAAGTATCCCAAGATTTACCACACCGAGAATCCATTCGAGTTTATGAACAA 47527 ||| ||| | ||| ||| || | |||||| ||||| || ||| ||| Sbjct 404123 CGTCGCGCTCGGCAACGAGAAGCACTACAACTCGTCGAATCCCTTCGACTTCATGGACAT 404182 Query 47528 CATTTCGCTCGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGGCGAATA 47578 || ||||| |||||||||| ||||| ||||||||||||||| ||| || Sbjct 404183 GATCTCGCTGCAGGGCAAGACGAACTTCTTCGAGAAGCGCGTCTCCGACTA 404233 >seq524 Length=649165 Score = 131 bits (144), Expect = 2e-25 Identities = 168/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | |||| || | || | ||| ||||| || || |||||||||||| | Sbjct 612917 CCACCACGCAGGCGCAGAACAAGGTGCAGCGTGGACTCCTTCTGGATATTGTAATCGGAC 612976 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||| ||| || || || || || || ||| | ||||| |||||||| ||||| || Sbjct 612977 AGCGTCCGACCGTCCTCGAGTTGCTTGCCGGCGAAAATCAAGCGCTGCTGGTCGGGCGGG 613036 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || |||||||| ||| ||||||| ||||| |||| || | ||||||| |||||| Sbjct 613037 ATCCCCTCCTTATCCTGGATTTTCGCCTTGACGTTG-TCAATCGTGTCCGAGGACTCGAC 613095 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 ||| | ||| | || || ||||||| || || ||||| ||||||||| Sbjct 613096 TTCCAGGGTGATGGTCTTCCCGGTCAACGTCTTGACAAAGATCTGCATG 613144 Score = 127 bits (140), Expect = 2e-24 Identities = 144/193 (75%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 126922 CTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTA 126981 ||| || ||||| ||||| ||| | |||||| || |||||||| || || ||| | Sbjct 613231 CTCCTTCTGAATGTTGTAGTCGGAGAGAGTGCGACCGTCCTCTAGCTGCTTGCCGGCGAA 613290 Query 126982 GATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTG 127041 ||||| |||||||| ||||| || ||||||||||||||| ||| || ||||| | Sbjct 613291 GATCAGACGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATT 613350 Query 127042 TTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTAC 127101 |||| ||||| | |||||||| || | ||| | ||| ||||| ||||| || || || Sbjct 613351 ATCGATAGTGTCACTGCTCTCGACCTCCAGGGTGATCGTCTTGCCCGTCAGCGTCTTCAC 613410 Query 127102 AAAAATCTGCATG 127114 || ||||||||| Sbjct 613411 GAAGATCTGCATG 613423 Score = 118 bits (130), Expect = 1e-21 Identities = 143/195 (73%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 126922 CTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTA 126981 ||| || || || |||||||| | |||||| ||| || ||||| || ||||| | Sbjct 613516 CTCCTTCTGGATGTTGTAATCAGAGAGCGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAA 613575 Query 126982 GATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTG 127041 ||||| |||||||| ||||| || ||||||||||||||| ||| || ||||| | Sbjct 613576 GATCAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATT 613635 Query 127042 TTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTAC 127101 |||| |||||| | |||||| |||| || | || |||||||| || || || || Sbjct 613636 ATCGATGGTGTCGCTGGACTCGACCTCGAGCGTGATGGTCTTGCCGGTGAGGGTCTTGAC 613695 Query 127102 AAAAATCTGCATGGC 127116 ||| |||||||| || Sbjct 613696 AAAGATCTGCATTGC 613710 >seq57 Length=599116 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 || || || || |||| || | ||| | ||| ||||| || || || |||||||| Sbjct 467450 CCGCCACGCAAGCGCAGGACGAGATGGAGCGTGGACTCCTTCTGGATGTTGTAATCCGAA 467509 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| || || | ||| || || ||| |||| | |||||||| |||||||| Sbjct 467510 AGAGTGCGGCCGTCCTCCAACTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGAGGG 467569 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||||||||| ||| ||| ||| ||||| | || | ||||| | ||| ||| Sbjct 467570 ATGCCCTCCTTATCCTGGATCTTCGCCTTGACGTTATCAATCGTGTCGGACGACTCAACT 467629 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || | || | ||| ||||| ||||| || || || || ||||||||| Sbjct 467630 TCCAACGTGATCGTCTTGCCAGTCAGCGTCTTGACGAAGATCTGCATG 467677 Score = 93.3 bits (102), Expect = 4e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || || || |||||||| | ||||| ||| || ||||| || || Sbjct 467708 GTCGACTCCTTCTGGATGTTGTAATCCGAAAGAGTGCGGCCATCCTCGAGCTGCTTGCCG 467767 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || |||| | |||||||| || || || ||||||||||||||| ||| ||| ||| Sbjct 467768 GCAAAGATAAGGCGCTGCTGGTCAGGTGGAATGCCCTCCTTGTCCTGGATCTTCGCTTTG 467827 Query 127037 A-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095 | |||| |||| ||||| | |||||| || | || | ||| |||||||| || || Sbjct 467828 ACGTTG-TCGATCGTGTCGGACGACTCGACCTCCAGCGTGATCGTCTTGCCGGTGAGTGT 467886 Query 127096 TTTTACAAAAATCTGCAT 127113 || || || || ||||| Sbjct 467887 CTTAACGAATATTTGCAT 467904 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || ||||| ||||| || | |||||| || || ||||| || || Sbjct 468221 GTCGACTCCTTCTGAATGTTGTAGTCCGAGAGAGTGCGACCGTCTTCGAGCTGCTTGCCG 468280 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || | || | || ||||| ||||| || ||||||||||||||| ||| ||| ||| Sbjct 468281 GCAAAAATGAGGCGTTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTC 468340 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | |||| |||||||| ||| || || | || | || ||||| || || || Sbjct 468341 ACATTGTCGATGGTGTCCGAGGACTCCACCTCCAACGTGATGGTCTTGCCAGTGAGTGTC 468400 Query 127097 TTTACAAAAATCTGCATG 127114 || ||||| ||||||||| Sbjct 468401 TTGACAAAGATCTGCATG 468418 >seq379 Length=286460 Score = 82.4 bits (90), Expect = 7e-11 Identities = 78/100 (78%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 145717 GCGTCGACGGTGAACTGCGTCGCTTGAGCGGCCGGTTTTGTGCGCAGATAGTACATGCCG 145776 |||||||| |||||||| | || || || ||||| |||||||| |||||||||||| Sbjct 266332 GCGTCGACCGTGAACTGAATGGCCTGCGCTGCCGGGCGCGTGCGCAGGTAGTACATGCCG 266273 Query 145777 GTCTTGAGCTGTTTCTGCCACGTGTAAAAGTGTATGCTCG 145816 |||||||| |||| ||| ||| ||||| ||||||| Sbjct 266272 GTCTTGAGGCCCTTCTTCCATCCGTAGAAGTGCATGCTCG 266233 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475497626032160