Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Auricularia_20auricula-judae_20[genbank_20GCA_5F002092955.1_202017- 04-17] 534 sequences; 43,569,032 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq524 105 6e-18 seq379 93.3 4e-14 seq124 86.0 6e-12 >seq524 Length=649165 Score = 105 bits (116), Expect = 6e-18 Identities = 166/233 (71%), Gaps = 6/233 (3%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || || || | || || || |||||||| || ||||| |||||||| |||||| Sbjct 612914 ATGCCACCACGCAGGCGCAGAACAAGGTGCAGCGTGGACTCCTTCTGGATATTGTAATCG 612973 Query 45171 CTGACGGTTTTAGAA--TCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCG 45228 ||| | | || || || | ||| || || ||| | ||||| || |||||||| | Sbjct 612974 --GACAGCGTCCGACCGTCCTCGAGTTGCTTGCCGGCGAAAATCAAGCGCTGCTGGTCGG 613031 Query 45229 GCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGAC 45287 |||| || || || ||||| || ||||| |||| || | || | ||||| || ||| Sbjct 613032 GCGGGATCCCCTCCTTATCCTGGATTTTCGCCTTGA-CGTTGTCAATCGTGTCCGAGGAC 613090 Query 45288 TCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 |||||||| || || | || || ||||| | || || ||||| || ||||| Sbjct 613091 TCGACTTCCAGGGTGATGGTCTTCCCGGTCAACGTCTTGACAAAGATCTGCAT 613143 Score = 87.8 bits (96), Expect = 2e-12 Identities = 145/207 (70%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 45135 AGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAAT 45194 ||||||||||| ||||| |||||||| || ||| | || || || | | Sbjct 612710 AGATGCAGCGTGCTCTCCTTCTGGATATTGTAGTCGGAAAGCGTGCGCCCGTCCTCGAGT 612769 Query 45195 TGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATT 45254 || || || ||| | || | || |||||||| ||||| || ||||| || || || ||| Sbjct 612770 TGCTTGCCGGCGAAAATAAGACGCTGCTGGTCGGGCGGGATTCCTTCCTTGTCCTGGATT 612829 Query 45255 TTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCC 45313 || |||| || | || | || ||||| |||||||| ||||| || | || ||||| Sbjct 612830 TTCGCCTTGA-CGTTGTCGATCGTATCGGAGGACTCGACCTCGAGCGTGATTGTCTTGCC 612888 Query 45314 GGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || || || ||||||||||| Sbjct 612889 AGTAAGCGTCTTGACGAAAATTTGCAT 612915 >seq379 Length=286460 Score = 93.3 bits (102), Expect = 4e-14 Identities = 283/432 (66%), Gaps = 9/432 (2%) Strand=Plus/Plus Query 122901 GTCGCCGAACGTATTCAACATATGCTCATGCGCGTCGCTATAGGCGTGCACGGACGCGAC 122960 ||||| || || ||| || ||||||||||||||||| | ||| | |||||||||||| Sbjct 264462 GTCGCTGAGCGGCCTCAGCAGATGCTCATGCGCGTCGCAGTGGGCATCCACGGACGCGAC 264521 Query 122961 ATCGAAAACGCGACCGAAACTTACGATTTGATGTCTCAAAAATTTTTCACGCACGCGAGT 123020 ||||| ||| | | | |||||| | ||||||| || | |||||||||||| Sbjct 264522 ATCGAGCGCGCCATCCAGACTTACAACCTGATGTCCGAACGCTACTTCACGCACGCGTCA 264581 Query 123021 CCCACTTTGTTCGCCGCCGGCACGAAGTTGCCTCAGTTGTCTTCGTGTTTTTTGCTCACC 123080 || || | |||||||| || || | || ||| || ||||| ||| | || Sbjct 264582 CCGACACTATTCGCCGCGGGGACCCCGCGCCCGCAGCTGAGCAGCTGTTTCTTGGTGGCC 264641 Query 123081 TTGCGCGAAGACAGCATCACCGGTATCTATGAAACTTTGCGCGATTGCGCGTTGATTTCC 123140 || || ||||| ||| || ||||| || || | | ||||| |||| | Sbjct 264642 ATGAAGGACGACAGTATCGAAGGCATCTACGACACGCTCAAGGCGTGCGCCATGATCAGC 264701 Query 123141 AAATTTGGCGGCGGCATAGGCGTGAACGTGCACGACGTAAGAGGCCGCGGAAGC-CG--C 123197 || || ||||| || ||| | ||| | ||| || | | ||| || || || | Sbjct 264702 AAGAGTGCGGGCGGTATTGGCCTTAACATTCACAACATCCG-CGCCAAGG--GCTCGTAC 264758 Query 123198 ATCAGAAGCACCGACGGAATCGCCTCCGGGCTCGAATCCATGCTGCGAGTTTACAATAAC 123257 ||| |||| |||| | | |||||||| |||||||||| | | | || Sbjct 264759 ATCGCGGGCACGAACGGCGTGTCGAACGGGCTCGTGCCCATGCTGCGCGCGTTCGATTCG 264818 Query 123258 GCCGTGCGGCACGTCGACCAGGGCGG---CAAACGCAAAGGCGCGATGGCGATCTATCTA 123314 | | ||| |||| ||||| ||||| ||| ||| |||||| | || ||||| || Sbjct 264819 ACGGCGCGCTACGTGGACCAAGGCGGCAACAAGCGCCCGGGCGCGTTTGCCATCTACCTC 264878 Query 123315 GAACCGTGGCAC 123326 || ||||||||| Sbjct 264879 GAGCCGTGGCAC 264890 Score = 84.2 bits (92), Expect = 2e-11 Identities = 150/214 (70%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 124105 TGCAGTACGACATGTGGAATGCTACACCGACAAATTTGTGGGACTGGAGCGTTTTAAAAC 124164 ||||||||||| ||||| | || ||||| | ||||||||||| ||| || Sbjct 219126 TGCAGTACGACCTGTGGGGCGTCACGCCGACGGACCTGTGGGACTGG-GCGAGCCTCAAG 219068 Query 124165 AACGCATATCGA-CGCAC-GGTTTGCGTAACTCGCTGTTGGTGGCGTACATGCCGACGGC 124222 | ||| |||| ||||| || |||| |||||||||||| ||||| ||||||||||| Sbjct 219067 GA-GCAGATCGCGCGCACAGGCCTGCGCAACTCGCTGTTGCTGGCGCCGATGCCGACGGC 219009 Query 124223 AACCACTGCTCAAATTTTAGGAAACAACGAATCCTTCGAGCCGTTCACTAACAATTTGTA 124282 | || || || | || |||||| | ||||||||||| ||| | ||| | || Sbjct 219008 GTCGACGAGCCAGATCCTCGGCTTCAACGAGTGCTTCGAGCCGTACACGAGCAACATCTA 218949 Query 124283 CGTGCGACGAGTGTTAGCCGGCGATTTTCAAGTG 124316 | ||| || ||| | || ||||| || || ||| Sbjct 218948 CACGCGCCGCGTGCTCGCGGGCGAGTTCCAGGTG 218915 >seq124 Length=448922 Score = 86.0 bits (94), Expect = 6e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 138377 CAAGCACGCAAAGTTGGTGTGTAAACCTTCGTCGCGAGAGATAAGTTCGTTGCTAAACGT 138436 || ||||||||||| |||||| | || |||||||| ||||| || |||||| ||||| Sbjct 289134 CAGGCACGCAAAGTCGGTGTGCATGCCCTCGTCGCGCGAGATGAGCTCGTTGGAGAACGT 289075 Query 138437 CAGCCCCGGCATGACGCCTTTGGTCTTGATGTAAAAGATGGCCGCGAAACTGCCCGaaaa 138496 ||| || ||||||| |||| |||||| | |||||| |||||| ||| || Sbjct 289074 CAGGCCGGGCATGAGGCCTCGCTTCTTGAGCCAGAAGATGCTCGCGAAGGAGCCGCTGAA 289015 Query 138497 aaaaaCGCCTTCGAC 138511 |||| |||||| || Sbjct 289014 GAAAATGCCTTCAAC 289000 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 452000182878640