Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Auricularia_20auricula-judae_20[genbank_20GCA_5F002092955.1_202017- 04-17] 534 sequences; 43,569,032 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq379 123 3e-23 seq124 95.1 1e-14 >seq379 Length=286460 Score = 123 bits (136), Expect = 3e-23 Identities = 435/673 (65%), Gaps = 15/673 (2%) Strand=Plus/Minus Query 116551 GCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTC 116610 || |||||||| ||||| | ||| || || || | || | || |||||| || | | Sbjct 265204 GCGTCCTTGTACAGCATGAACGGCCCACCGGTTTCGATCTGCGCCTCGAGAATGGCGTAC 265145 Query 116611 CATA-CATCGGCGGCTGGCACAGTGGCGTTG---GCTCGCCCCTCCTCCTCGTACTTTGT 116666 || | | || ||| | || || | || || || ||||||| |||||| | Sbjct 265144 CACAGCTTCTGCGCCGGGA----TGACCTTCCGCGCGCGACCCTCCTTCTCGTAGCGTTC 265089 Query 116667 GTAGAGGGCCTCAAACTCTTCACCCACAGCCTCTGAGAGCCCTGGTGCCTTATCTGGACA 116726 ||||| ||||||||||| | | |||| || || ||||||| | || || Sbjct 265088 ATAGAGCGCCTCAAACTCGGCGCTGTGCACCTCGTGCAGACCCGGTGCCTCGTTCGGGCA 265029 Query 116727 GAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAG 116786 ||||| ||||| | | | |||| || ||||||||||| ||||| || |||||||| Sbjct 265028 GAAGAACGACCAATCCGCGTTCGCCTCGACGCGCTTCATGAATAGGTCGGGAATCCAGAG 264969 Query 116787 CGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAA 116846 ||| |||| || ||||| ||| | ||||| | || || || |||| || | Sbjct 264968 CGCGTAGAACAGGTCCCGCGCGCGGACCTCTTCCTTGCCGTGGTTCTTGCGCAGGTCGAG 264909 Query 116847 AAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTGCG--- 116903 || || | ||| |||| ||||||||| || ||||| | || | | ||| ||| Sbjct 264908 GAATTCGAAGATGTCCGGGTGCCACGGCTCGAGGTAGATGGCAAACGCGCCCGGGCGCTT 264849 Query 116904 ACGACCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATACGCGAAGCATTGGAATGAT 116963 || | |||| || || | |||||| | | || |||| ||||| || | || Sbjct 264848 GTTGCCGCCTTGGTCCACGTAGCGCGCCGTCGAATCGAACGCGCGCAGCATGGGCACGAG 264789 Query 116964 ACCATCAGATTGGCCATTTGT-CCCCCGA-ATACGAGACTTGTTGGCTCTGACATCGTGG 117021 || | || ||| || || ||| ||| |||||| | ||||| | || | ||| Sbjct 264788 CCCGTTCGACACGCCGTTCGTGCCCGCGATGTACGAGCC--CTTGGCGCGGATGTTGTGA 264731 Query 117022 ATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTGAGACTGCCG 117081 |||| | |||||||| || || | ||| ||| |||||| || |||| || || Sbjct 264730 ATGTTAAGGCCAATACCGCCCGCACTCTTGCTGATCATGGCGCACGCCTTGAGCGTGTCG 264671 Query 117082 TAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGTGGC 117141 ||||| || ||||| ||| |||| | || | | ||| ||||| || || || Sbjct 264670 TAGATGCCTTCGATACTGTCGTCCTTCATGGCCACCAAGAAACAGCTGCTCAGCTGCGGG 264611 Query 117142 CTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCTTGGGACATC 117201 | || || || ||| ||| || || |||| |||||| |||| | || ||||||| Sbjct 264610 CGCGGGGTCCCCGCGGCGAATAGTGTCGGTGACGCGTGCGTGAAGTAGCGTTCGGACATC 264551 Query 117202 TTATCGTAGGTCT 117214 | ||| |||| Sbjct 264550 AGGTTGTAAGTCT 264538 Score = 87.8 bits (96), Expect = 2e-12 Identities = 278/427 (65%), Gaps = 13/427 (3%) Strand=Plus/Plus Query 116767 AAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCC 116826 || || || || ||||||||||| ||||||| || || ||| | || || | || Sbjct 219912 AAAAGATCGGGAATCCAGAGCGCATAGAAGAGGTCGCGCGCGCGGACCTCCTCTTTGCCG 219971 Query 116827 TGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACC 116886 || || |||| || | ||||| | | ||||| |||||||| || | ||| | | Sbjct 219972 TGGTTCTTGCGCAGGTCGAGGAAGTCGAACACGTCCGCATGCCACGGCTCGATGTAAATC 220031 Query 116887 GCGATTGACCCCTTGCGACG------ACCAGCCTGGTTTACATACCTCGCCGTTGCGTTA 116940 |||| | || | |||| ||| |||||| ||||| | |||||| | || Sbjct 220032 GCGAACGCGCC---GGGACGCTTGTTACCGCCCTGGTCGACATAGCGCGCCGTCGAGTCG 220088 Query 116941 AATACGCGAAGCATTGGAATGATACCATCAGATTGGCCATTTGTCCCC-CGAA-TACGAG 116998 | |||| ||||| || | ||| || | ||||| || || ||| ||| |||||| Sbjct 220089 TACGCGCGCAGCATGGGCACGATGCCGTTGCTGTGGCCGTTCGTGCCCGCGATGTACGAG 220148 Query 116999 ACTTGTTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTT 117058 | | | || | | |||||||| | || || || || ||| ||| ||| Sbjct 220149 CCCT--TCGCGCGAATGCAGTGGATGTTGAGGCCGATGCCGCCGGCCGTCTTGCTGATCA 220206 Query 117059 GTGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGA 117118 |||||| | |||| || ||||||| || ||||||||||| |||| | | || | Sbjct 220207 TCGCGCACGTCTTGAGCGTGTCGTAGATGCCCTCGATCGAGTCCTCCTTCATCGTGACAA 220266 Query 117119 GGAAGCAGCTCGACATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGT 117178 |||||||||| || || || || || || ||||||||||| || || | |||| Sbjct 220267 GGAAGCAGCTGCTCAGCTGCGGATGCGGCGTGCCGGCGTTGAAGAGCGTCGGCGAAGCGT 220326 Query 117179 GGATGAA 117185 | |||| Sbjct 220327 GCGTGAA 220333 >seq124 Length=448922 Score = 95.1 bits (104), Expect = 1e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 10711 GGGAACCTCAACGCCGAGAGGGACTGGGGACACGCCAAGGACTATGTTGAAGCCATGTGG 10770 || |||||| |||| || | |||||||| |||||||||||||| ||||| | ||||||| Sbjct 102256 GGCAACCTCGACGCGAAGCGCGACTGGGGCCACGCCAAGGACTACGTTGAGGGCATGTGG 102197 Query 10771 CTCGTACTCCAACAAGAAGAGGCGGACGAATATGTCGTCGCGACGGGGGAGACACACTCC 10830 | | | ||||| || || || || || | |||| | || || || ||||| ||| || Sbjct 102196 CGCATGCTCCAGCAGGACACCGCCGAGGACTTTGTCCTTGCCACCGGCGAGACCCACCCC 102137 Query 10831 GTCAGGGAGTTCGTTGA 10847 ||| | ||||| || || Sbjct 102136 GTCCGCGAGTTTGTCGA 102120 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613503104839440