Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Auricularia_20auricula-judae_20[genbank_20GCA_5F002092955.1_202017- 04-17] 534 sequences; 43,569,032 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq57 149 1e-30 seq524 109 1e-18 seq379 105 2e-17 seq190 93.3 1e-13 >seq57 Length=599116 Score = 149 bits (164), Expect = 1e-30 Identities = 156/205 (76%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 199422 CAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCA 199481 |||||||||||||||||||||| |||| ||| ||||| | | ||| | || ||||| | Sbjct 467982 CAAGGTGGAGAGTCGACTCCTTCTGGATGTTATAGTCCGAAAGAGTGCGACCGTCTTCGA 468041 Query 199482 GCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAA 199541 ||||||| |||||||| ||||| ||||||||||| || || ||||| ||||| | Sbjct 468042 GCTGCTTGCCGGCGAAAATGAGGCGCTGCTGGTCTGGCGGGATGCCTTCCTTGTCCTGGA 468101 Query 199542 TCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTAC 199601 |||| ||||||| |||| |||||| | | || || |||| |||||| ||||| | Sbjct 468102 TCTTCGCCTTCACGTTGTCGATGGTGTCCGAAGACTCCACCTCCAGCGTGATGGTCTTGC 468161 Query 199602 CCGTGAGAGTTTTCACAAAAATTTG 199626 |||| || || || || || ||||| Sbjct 468162 CCGTCAGTGTCTTGACGAAGATTTG 468186 Score = 143 bits (158), Expect = 6e-29 Identities = 157/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 |||||||||||||||||||||||||| || | ||||||||| | | ||| | || ||| Sbjct 468206 AGGACAAGGTGGAGAGTCGACTCCTTCTGAATGTTGTAGTCCGAGAGAGTGCGACCGTCT 468265 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || |||||||| ||||| || ||||| || |||||||| || || || || ||| Sbjct 468266 TCGAGCTGCTTGCCGGCAAAAATGAGGCGTTGCTGGTCGGGCGGGATGCCCTCCTTGTCC 468325 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| |||||| |||| |||||| | | || || ||||||||||| ||| Sbjct 468326 TGGATCTTCGCCTTCACATTGTCGATGGTGTCCGAGGACTCCACCTCCAACGTGATGGTC 468385 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || ||||| || || ||||| || || Sbjct 468386 TTGCCAGTGAGTGTCTTGACAAAGATCTG 468414 Score = 127 bits (140), Expect = 5e-24 Identities = 154/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 |||||| || ||||| || |||||||| |||| |||||| || | | ||| | || || Sbjct 467464 CAGGACGAGATGGAGCGTGGACTCCTTCTGGATGTTGTAATCCGAAAGAGTGCGGCCGTC 467523 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 |||| |||||| |||||||||||||| ||||||||||| ||| || || || || Sbjct 467524 CTCCAACTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGAGGGATGCCCTCCTTATC 467583 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 ||| ||||| ||| ||| || | ||||| | | || || |||||||||||||| Sbjct 467584 CTGGATCTTCGCCTTGACGTTATCAATCGTGTCGGACGACTCAACTTCCAACGTGATCGT 467643 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||| || || || || || || || || || Sbjct 467644 CTTGCCAGTCAGCGTCTTGACGAAGATCTG 467673 Score = 125 bits (138), Expect = 2e-23 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| || || || ||||||||||| |||| |||||| || | | ||| | ||||| Sbjct 467693 AGGACGAGATGCAGTGTCGACTCCTTCTGGATGTTGTAATCCGAAAGAGTGCGGCCATCC 467752 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || |||||||| ||||| ||||| || ||||||||||| || ||| || || ||| Sbjct 467753 TCGAGCTGCTTGCCGGCAAAGATAAGGCGCTGCTGGTCAGGTGGAATGCCCTCCTTGTCC 467812 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| || ||| |||| ||||| | | || || |||| |||||||||| Sbjct 467813 TGGATCTTCGCTTTGACGTTGTCGATCGTGTCGGACGACTCGACCTCCAGCGTGATCGTC 467872 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || ||||| || || || || ||||| Sbjct 467873 TTGCCGGTGAGTGTCTTAACGAATATTTG 467901 Score = 93.3 bits (102), Expect = 1e-13 Identities = 86/109 (79%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| |||||||| || |||||| |||| ||| ||||| | || || | ||||| Sbjct 468434 AGGACGAGGTGGAGCGTGCTCTCCTTCTGGATGTTATAGTCCGACAGGGTGCGACCATCC 468493 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTC 199526 || |||||||| || |||||||| ||||||||||| |||||| ||||| Sbjct 468494 TCGAGCTGCTTGCCCGCGAAGATAAGACGCTGCTGATCCGGAGGAATTC 468542 >seq524 Length=649165 Score = 109 bits (120), Expect = 1e-18 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 199424 AGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGC 199483 |||||||| || |||||| || | ||||||||| | | ||| | || || || ||| Sbjct 613217 AGGTGGAGCGTGCTCTCCTTCTGAATGTTGTAGTCGGAGAGAGTGCGACCGTCCTCTAGC 613276 Query 199484 TGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATC 199543 ||||| ||||||||||| |||||||||||||| || || || || ||||| ||| Sbjct 613277 TGCTTGCCGGCGAAGATCAGACGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGGATC 613336 Query 199544 TTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCC 199603 || ||| || |||| ||||| | | || || |||| ||||||||||| ||| Sbjct 613337 TTGGCCTTGACATTATCGATAGTGTCACTGCTCTCGACCTCCAGGGTGATCGTCTTGCCC 613396 Query 199604 GTGAGAGTTTTCACAAAAATTTG 199626 || || || ||||| || || || Sbjct 613397 GTCAGCGTCTTCACGAAGATCTG 613419 Score = 96.9 bits (106), Expect = 8e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 199424 AGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGC 199483 || ||||| || |||||| |||| |||||| |||| | || | ||||| || ||| Sbjct 613502 AGATGGAGCGTGCTCTCCTTCTGGATGTTGTAATCAGAGAGCGTGCGGCCATCCTCGAGC 613561 Query 199484 TGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATC 199543 ||||| || || ||||| || ||||||||||| || || || || ||||| ||| Sbjct 613562 TGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGGATC 613621 Query 199544 TTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCC 199603 || ||| || |||| |||||| | | || || || | |||||| ||||| || Sbjct 613622 TTGGCCTTGACATTATCGATGGTGTCGCTGGACTCGACCTCGAGCGTGATGGTCTTGCCG 613681 Query 199604 GTGAGAGTTTTCACAAAAATTTG 199626 ||||| || || ||||| || || Sbjct 613682 GTGAGGGTCTTGACAAAGATCTG 613704 Score = 91.5 bits (100), Expect = 3e-13 Identities = 143/205 (70%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 199422 CAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCA 199481 |||| || || || |||||| |||| |||||||| | | || | || || || | Sbjct 612708 CAAGATGCAGCGTGCTCTCCTTCTGGATATTGTAGTCGGAAAGCGTGCGCCCGTCCTCGA 612767 Query 199482 GCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAA 199541 | ||||| |||||||| || |||||||||||||| || |||||||| ||||| | Sbjct 612768 GTTGCTTGCCGGCGAAAATAAGACGCTGCTGGTCGGGCGGGATTCCTTCCTTGTCCTGGA 612827 Query 199542 TCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTAC 199601 | || ||| ||| |||| || || | | || || || | |||||| ||||| | Sbjct 612828 TTTTCGCCTTGACGTTGTCGATCGTATCGGAGGACTCGACCTCGAGCGTGATTGTCTTGC 612887 Query 199602 CCGTGAGAGTTTTCACAAAAATTTG 199626 | || || || || || |||||||| Sbjct 612888 CAGTAAGCGTCTTGACGAAAATTTG 612912 Score = 87.8 bits (96), Expect = 4e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | ||| |||||||| || || |||||||| |||| ||||| || | || ||| Sbjct 612923 CGCAGGCGCAGAACAAGGTGCAGCGTGGACTCCTTCTGGATATTGTAATCGGACAGCGTC 612982 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || || || || ||||| |||||||| || | ||||||||||| || || || Sbjct 612983 CGACCGTCCTCGAGTTGCTTGCCGGCGAAAATCAAGCGCTGCTGGTCGGGCGGGATCCCC 613042 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| || || ||| ||| || | ||||| | | || || |||| Sbjct 613043 TCCTTATCCTGGATTTTCGCCTTGACGTTGTCAATCGTGTCCGAGGACTCGACTTCCAGG 613102 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| || || | || || ||||| || || Sbjct 613103 GTGATGGTCTTCCCGGTCAACGTCTTGACAAAGATCTG 613140 >seq379 Length=286460 Score = 105 bits (116), Expect = 2e-17 Identities = 84/101 (83%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||||||||| || ||||||||||| |||| ||||||||| | || |||| || || Sbjct 273228 AGGACAAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGACAGCGTCCGGCCGTCC 273169 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGG 199518 ||||||||||| ||||| ||||| || ||||||||||| || Sbjct 273168 TCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCGGG 273128 >seq190 Length=372578 Score = 93.3 bits (102), Expect = 1e-13 Identities = 81/101 (80%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| || || ||||||||||| || |||| ||||||||| | | ||| | || || Sbjct 156973 AGGACCAGATGCAGAGTCGACTCTTTCTGGATGTTGTAGTCCGAGAGAGTGCGGCCGTCC 156914 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGG 199518 || |||||||| ||||||||||| || ||||||||||| || Sbjct 156913 TCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGG 156873 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178913533965778