Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Auricularia_20auricula-judae_20[genbank_20GCA_5F002092955.1_202017- 04-17] 534 sequences; 43,569,032 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq57 161 1e-34 seq524 159 4e-34 seq190 107 2e-18 seq379 89.7 6e-13 >seq57 Length=599116 Score = 161 bits (178), Expect = 1e-34 Identities = 153/193 (79%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| || ||||| || |||||||| |||| |||||||||||||||||||| Sbjct 467998 CTCCTTCTGGATGTTATAGTCCGAAAGAGTGCGACCGTCTTCGAGCTGCTTGCCGGCGAA 468057 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | |||||||||||| | ||| | || ||||||||| ||||||| ||| | ||| Sbjct 468058 AATGAGGCGCTGCTGGTCTGGCGGGATGCCTTCCTTGTCCTGGATCTTCGCCTTCA-CGT 468116 Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580 | | | ||||| || ||||| |||| ||||||||| ||||||||||| || || | Sbjct 468117 TGTCGATGGTGTCCGAAGACTCCACCTCCAGCGTGATGGTCTTGCCCGTCAGTGTCTTGA 468176 Query 46581 CAAAGATTTGCAT 46593 | ||||||||||| Sbjct 468177 CGAAGATTTGCAT 468189 Score = 156 bits (172), Expect = 5e-33 Identities = 162/210 (77%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 || ||||||| ||| |||||| ||||| ||||| || || |||||||| | || ||| Sbjct 467696 ACGAGATGCAGTGTCGACTCCTTCTGGATGTTGTAATCCGAAAGAGTGCGGCCATCCTCG 467755 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 |||||||||||||| || || | |||||||||||| | || | || |||||||||| | Sbjct 467756 AGCTGCTTGCCGGCAAAGATAAGGCGCTGCTGGTCAGGTGGAATGCCCTCCTTGTCCTGG 467815 Query 46505 ATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTT 46563 |||||| |||| ||| | | | ||||||| ||| || || |||| |||||| || || Sbjct 467816 ATCTTCGCTTTGA-CGTTGTCGATCGTGTCGGACGACTCGACCTCCAGCGTGATCGTCTT 467874 Query 46564 GCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||| || || || ||||| || |||||||| Sbjct 467875 GCCGGTGAGTGTCTTAACGAATATTTGCAT 467904 Score = 154 bits (170), Expect = 2e-32 Identities = 165/218 (76%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 46376 AAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGC 46435 || |||| || ||||| | || |||||| ||||| ||||| || || |||||||| Sbjct 467459 AAGCGCAGGACGAGATGGAGCGTGGACTCCTTCTGGATGTTGTAATCCGAAAGAGTGCGG 467518 Query 46436 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCC 46495 |||| || | ||||||||||||||| || | |||||||||||||| || | || |||| Sbjct 467519 CCGTCCTCCAACTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGAGGGATGCCCTCC 467578 Query 46496 TTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTG 46555 || ||| ||||||| ||||| | | | ||||||| ||| || || |||| |||| Sbjct 467579 TTATCCTGGATCTTCGCCTTGACGTTATCAATCGTGTCGGACGACTCAACTTCCAACGTG 467638 Query 46556 ATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || || ||||| |||||||| || || ||||| ||||| Sbjct 467639 ATCGTCTTGCCAGTCAGCGTCTTGACGAAGATCTGCAT 467676 Score = 149 bits (164), Expect = 7e-31 Identities = 148/192 (77%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| || || |||||||| || |||||||| |||| ||||||||||||||||| || Sbjct 468226 CTCCTTCTGAATGTTGTAGTCCGAGAGAGTGCGACCGTCTTCGAGCTGCTTGCCGGCAAA 468285 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | ||| |||||||||| ||| | || |||||||||| ||||||| ||| | | Sbjct 468286 AATGAGGCGTTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTCACATT 468345 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | ||||| || ||||| |||| ||||||||| ||||| || || || || || Sbjct 468346 GTCGATGGTGTCCGAGGACTCCACCTCCAACGTGATGGTCTTGCCAGTGAGTGTCTTGAC 468405 Query 46582 AAAGATTTGCAT 46593 |||||| ||||| Sbjct 468406 AAAGATCTGCAT 468417 >seq524 Length=649165 Score = 159 bits (176), Expect = 4e-34 Identities = 161/207 (78%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 46388 AGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGC 46447 ||||||| || |||||||| ||||||||||||||||| || |||||| |||| ||||| Sbjct 612710 AGATGCAGCGTGCTCTCCTTCTGGATATTGTAGTCGGAAAGCGTGCGCCCGTCCTCGAGT 612769 Query 46448 TGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATC 46507 |||||||||||||| || | ||||||||||||| ||| | | ||||||||| ||| Sbjct 612770 TGCTTGCCGGCGAAAATAAGACGCTGCTGGTCGGGCGGGATTCCTTCCTTGTCCTGGATT 612829 Query 46508 TTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCC 46566 ||| ||||| ||| | | | ||| ||| || || || || | |||||| || ||||| Sbjct 612830 TTCGCCTTGA-CGTTGTCGATCGTATCGGAGGACTCGACCTCGAGCGTGATTGTCTTGCC 612888 Query 46567 CGTCAGCGTTTTAACAAAGATTTGCAT 46593 || ||||| || || || |||||||| Sbjct 612889 AGTAAGCGTCTTGACGAAAATTTGCAT 612915 Score = 158 bits (174), Expect = 1e-33 Identities = 153/197 (78%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 46397 GTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCG 46456 || |||||||| || || ||||||||||| |||||||| |||| || |||||||||||| Sbjct 613226 GTGCTCTCCTTCTGAATGTTGTAGTCGGAGAGAGTGCGACCGTCCTCTAGCTGCTTGCCG 613285 Query 46457 GCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTG 46516 ||||| |||| ||||||||||||| ||| | || |||||||||| |||||| |||| Sbjct 613286 GCGAAGATCAGACGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTG 613345 Query 46517 AGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTT 46576 | | | | ||||| || || || |||| ||||| || |||||||||||||| Sbjct 613346 ACATTATCGATAGTGTCACTGCTCTCGACCTCCAGGGTGATCGTCTTGCCCGTCAGCGTC 613405 Query 46577 TTAACAAAGATTTGCAT 46593 || || ||||| ||||| Sbjct 613406 TTCACGAAGATCTGCAT 613422 Score = 158 bits (174), Expect = 1e-33 Identities = 163/212 (77%), Gaps = 1/212 (0%) Strand=Plus/Plus Query 46384 CACC-AGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGT 46442 |||| ||||| | || |||||||| ||||| ||||| || || || ||||| | || | Sbjct 613497 CACCGAGATGGAGCGTGCTCTCCTTCTGGATGTTGTAATCAGAGAGCGTGCGGCCATCCT 613556 Query 46443 CGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCA 46502 ||||||||||||| || || |||| |||||||||||||| ||| | || |||||||||| Sbjct 613557 CGAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCT 613616 Query 46503 TGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTT 46562 |||||| ||||| | | | |||||||| || || || || | ||||||||| | Sbjct 613617 GGATCTTGGCCTTGACATTATCGATGGTGTCGCTGGACTCGACCTCGAGCGTGATGGTCT 613676 Query 46563 TGCCCGTCAGCGTTTTAACAAAGATTTGCATT 46594 |||| || || || || |||||||| |||||| Sbjct 613677 TGCCGGTGAGGGTCTTGACAAAGATCTGCATT 613708 Score = 152 bits (168), Expect = 6e-32 Identities = 165/216 (76%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 |||| || || |||| || |||||| ||||||||||| ||||| || || || || Sbjct 612929 CGCAGAACAAGGTGCAGCGTGGACTCCTTCTGGATATTGTAATCGGACAGCGTCCGACCG 612988 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498 || ||||| |||||||||||||| ||||||||||||||||||| ||| | | |||||| Sbjct 612989 TCCTCGAGTTGCTTGCCGGCGAAAATCAAGCGCTGCTGGTCGGGCGGGATCCCCTCCTTA 613048 Query 46499 TCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGAT 46557 ||| ||| ||| ||||| ||| | | | |||||| || || || |||| ||||| Sbjct 613049 TCCTGGATTTTCGCCTTGA-CGTTGTCAATCGTGTCCGAGGACTCGACTTCCAGGGTGAT 613107 Query 46558 GGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||| || || |||| ||| || |||||||| ||||| Sbjct 613108 GGTCTTCCCGGTCAACGTCTTGACAAAGATCTGCAT 613143 >seq190 Length=372578 Score = 107 bits (118), Expect = 2e-18 Identities = 88/107 (82%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 |||||||||| || ||| || ||||| |||||||| || |||||||| |||| ||| Sbjct 156970 ACCAGATGCAGAGTCGACTCTTTCTGGATGTTGTAGTCCGAGAGAGTGCGGCCGTCCTCG 156911 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCT 46491 ||||||||||||||||| |||| |||||||||||| | ||| | ||| Sbjct 156910 AGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGCGGGATGCT 156864 >seq379 Length=286460 Score = 89.7 bits (98), Expect = 6e-13 Identities = 70/84 (83%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| |||||||| || || || || |||| || |||||||||||||| || Sbjct 273208 CTCCTTCTGGATGTTGTAGTCCGACAGCGTCCGGCCGTCCTCCAGCTGCTTGCCGGCAAA 273149 Query 46462 TATCAAGCGCTGCTGGTCGGCCGG 46485 |||| |||||||||||||| ||| Sbjct 273148 GATCAGGCGCTGCTGGTCGGGCGG 273125 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565234627033680