Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Auricularia_20auricula-judae_20[genbank_20GCA_5F002092955.1_202017- 04-17] 534 sequences; 43,569,032 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq101 228 8e-55 seq124 201 1e-46 seq57 131 2e-25 seq524 118 1e-21 seq190 87.8 2e-12 seq379 86.0 6e-12 >seq101 Length=461416 Score = 228 bits (252), Expect = 8e-55 Identities = 361/511 (71%), Gaps = 10/511 (2%) Strand=Plus/Minus Query 132625 TTCTCaaaaaaaTTAGTTTTTCCCTCCAAGGAAATGAGCGTCATAAAATCCAAGGGGTTG 132684 ||||| || || || || || |||| || || || | ||| || || ||||| || Sbjct 404218 TTCTCGAAGAAGTTCGTCTTGCCCTGCAGCGAGATCATGTCCATGAAGTCGAAGGGATTC 404159 Query 132685 GCTGTGTTGTAGTGCTT---GGTGCCGATCAGGTCGACGAGCAGCCTGTCGGCCACGAAC 132741 | | |||||||||||| | |||||| | |||||||||| | |||||| |||||| Sbjct 404158 GACGAGTTGTAGTGCTTCTCGTTGCCGAGCG---CGACGAGCAGGCGGTCGGCGACGAAC 404102 Query 132742 TCGATGTATTGCGACATGG-TTTCGCAATTAAGTCCCAGCAGACGCACCGGCAGCGCTTC 132800 ||||| || || ||| ||||| | || | || | || || || ||||| || Sbjct 404101 TCGATATACTGGTTCATCAATTTCG-AGTTCATGCCGATGAGCGAGACGGGGAGCGCGTC 404043 Query 132801 GGTGAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGACGATTTCCCTAACGCGCGCCGC 132860 |||||| || |||||||| || || || |||| ||| | ||| | | || Sbjct 404042 GGTGAGGAACTCCTGCTCGATCTTCACGGCCTCCGTGATGATCGTGCGGACG-GTGTCGG 403984 Query 132861 GCT-CGGCCGTTGCACCAAATGCTTGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCT 132919 | | ||| |||| | |||| ||| | |||||| || |||||| |||| ||||| Sbjct 403983 GGTGCGGGCGTTTGCGGAGATGCGAGAAGAGCAAGCAGGCGAAGTCGGTGTGCATGCCCT 403924 Query 132920 CGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGA 132979 |||| | || ||||| |||||| ||| || | ||| ||||| |||||||| || |||| Sbjct 403923 CGTCGCGCGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGCATCAGGCCGCGCTTCTTGA 403864 Query 132980 GCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCA 133039 |||| || |||| ||||| ||| ||||| | |||||||||||| ||||| || | Sbjct 403863 GCCAGAAGATGGACGCGAAGGAGCCGCTGAAGAAAATGCCCTCGACGGCGGCGAAGGCGA 403804 Query 133040 CCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGCGATCCAGCGCAGCGCCCATTCGGCCT 133099 |||||||||||||| || | || ||| || ||||||||||||||||| ||||||| Sbjct 403803 TGAGGCGCTCGCCGAAAGTCGAGTCCTTGTCGGATATCCAGCGCAGCGCCCACTCGGCCT 403744 Query 133100 TTTCTTTGACGCACGGCATCGTTTCGATGGC 133130 | |||| |||||| || || |||||||| Sbjct 403743 TGCGCTTGATGCACGGGATGGTCTCGATGGC 403713 Score = 178 bits (196), Expect = 1e-39 Identities = 168/214 (79%), Gaps = 3/214 (1%) Strand=Plus/Minus Query 133218 GATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTC 133277 |||||| |||||||| || || |||||||| | ||| || || | | ||||||||| Sbjct 403557 GATTTGGAAGCCGTAGAAACAGCGCGCCTCTGCGCACTGAACCTCGTTCGAGAAACGCTC 403498 Query 133278 GACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGAT 133337 ||| || || |||||||||||||||||| |||||||| || || || | || ||| Sbjct 403497 GACGAGGTTCTCGTTGACGATGCCGTCGGACGCGGCGAAGAACGCGAGGATATGGGAGAT 403438 Query 133338 GAAATGGCGCTCGTTGTCGTTCA---AGCGCTCCCAGTCGCGCGTGTCCTTGGACAGGTC 133394 ||||||||||||||||||||| | | |||||||||| ||| ||||||||||||||| Sbjct 403437 GAAATGGCGCTCGTTGTCGTTGAGTTTGTTCTCCCAGTCGTGCGCGTCCTTGGACAGGTC 403378 Query 133395 CACCTCCTCGACGGTCCAAAACGACGCCTCGGCT 133428 || ||| || ||||||| || || ||||||||| Sbjct 403377 CATCTCTTCCGCGGTCCAGAATGAAGCCTCGGCT 403344 >seq124 Length=448922 Score = 201 bits (222), Expect = 1e-46 Identities = 361/520 (69%), Gaps = 12/520 (2%) Strand=Plus/Minus Query 132625 TTCTCaaaaaaaTTAGTTTTTCCCTCCAAGGAAATGAGCGTCATAAAATCCAAGGGGTTG 132684 ||||| || || || || || |||| || || || | ||| || || ||||| || Sbjct 289400 TTCTCGAAGAAGTTCGTCTTGCCCTGCAGCGAGATCATGTCCATGAAGTCGAAGGGATTC 289341 Query 132685 GCTGTGTTGTAGTGCTT---GGTGCCGATCAGGTCGACGAGCAGCCTGTCGGCCACGAAC 132741 | | |||||||||||| | |||||| | ||||||| || | ||| || |||||| Sbjct 289340 GACGAGTTGTAGTGCTTCTCGTTGCCGA---GTGCGACGAGGAGGCGGTCCGCGACGAAC 289284 Query 132742 TCGATGTATTGCGACATG-GTTTCGCAATTAAGTCCCAGCAGACGCACCGGCAGCGCTTC 132800 |||||||| || ||| | |||| | || | || | || || || ||||| || Sbjct 289283 TCGATGTACTGGTTCATCAGCTTCG-AGTTCATGCCGATGAGGGAGACGGGGAGCGCGTC 289225 Query 132801 GGTGAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGACGATTTCCCTAACGCGCGCCGC 132860 ||||| || |||||||| || || || |||| ||| | ||| | | || Sbjct 289224 CGTGAGGAACTCCTGCTCGATCTTCACAGCTTCTGTGATGATCATGCGGACG-GTGTCGG 289166 Query 132861 GCTC--GGCCGTTGCACCAAATGCTTGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCC 132918 | | ||| |||| | ||| ||| | || ||| ||||||||| |||| |||| Sbjct 289165 GATGTGGGCGCTTGCGG-AGGTGCGAGAAGAGCAGGCACGCAAAGTCGGTGTGCATGCCC 289107 Query 132919 TCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTG 132978 ||||| | || ||||| |||||| ||| |||| ||||||||||||||| || || ||| Sbjct 289106 TCGTCGCGCGAGATGAGCTCGTTGGAGAACGTCAGGCCGGGCATGAGGCCTCGCTTCTTG 289047 Query 132979 AGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCC 133038 ||||| || ||| ||||| ||| ||||| | ||| || ||||| ||||| || Sbjct 289046 AGCCAGAAGATGCTCGCGAAGGAGCCGCTGAAGAAAATGCCTTCAACGGCGGCGAAGGCA 288987 Query 133039 ACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGCGATCCAGCGCAGCGCCCATTCGGCC 133098 | |||||||||||||| || | || ||| | |||||||||||| ||||| |||||| Sbjct 288986 ATGAGGCGCTCGCCGAATGTCGAGTCCTTGTCCGAGATCCAGCGCAGTGCCCACTCGGCC 288927 Query 133099 TTTTCTTTGACGCACGGCATCGTTTCGATGGCGTTCAACA 133138 || |||| ||| || || || |||||||||| |||| Sbjct 288926 TTGCGCTTGATGCATGGGATAGTCTCGATGGCGTCAAACA 288887 Score = 172 bits (190), Expect = 5e-38 Identities = 167/214 (78%), Gaps = 3/214 (1%) Strand=Plus/Minus Query 133218 GATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTC 133277 |||||| ||||| || ||||| |||||||| | |||||| || | | ||||||||| Sbjct 288741 GATTTGGAAGCCATAGAAGCAGCGCGCCTCTGCACACTGCACCTCGTTCGAGAAACGCTC 288682 Query 133278 GACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGAT 133337 ||| || || || ||||||||||||||| ||||||||||| || || | ||| ||| Sbjct 288681 GACGAGGTTCTCATTGACGATGCCGTCGGACGCGGCGAAAAACGCGAGGATGTGAGAGAT 288622 Query 133338 GAAATGGCGCTCGTTGTCGTT---CAAGCGCTCCCAGTCGCGCGTGTCCTTGGACAGGTC 133394 || ||||||||||||||||| | | ||||||||| | | ||||||||| ||||| Sbjct 288621 AAAGTGGCGCTCGTTGTCGTTGAGCTTGTTTTCCCAGTCGTGAGCGTCCTTGGAGAGGTC 288562 Query 133395 CACCTCCTCGACGGTCCAAAACGACGCCTCGGCT 133428 || ||||||| | ||||| ||||| ||||||||| Sbjct 288561 CATCTCCTCGGCCGTCCAGAACGAAGCCTCGGCT 288528 >seq57 Length=599116 Score = 131 bits (144), Expect = 2e-25 Identities = 168/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||||||||| || || ||||| ||||| || ||||| | || |||||| | || Sbjct 467904 ATGCAAATATTCGTTAAGACACTCACCGGCAAGACGATCACGCTGGAGGTCGAGTCGTCC 467845 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | |||| | |||| || |||| ||||| ||||| ||||| | ||||| Sbjct 467844 GACACGATCGACAACG-TCAAAGCGAAGATCCAGGACAAGGAGGGCATTCCACCTGACCA 467786 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| || || | || ||||| ||||| || || | ||||| || || ||||| Sbjct 467785 GCAGCGCCTTATCTTTGCCGGCAAGCAGCTCGAGGATGGCCGCACTCTTTCGGATTACAA 467726 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||| ||||| |||| |||||| | || || ||| || | |||||| Sbjct 467725 CATCCAGAAGGAGTCGACACTGCATCTCGTCCTTCGTCTGCGCGGCGGC 467677 Score = 125 bits (138), Expect = 7e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || ||||| || ||||| || ||||| | || || ||| | || Sbjct 467676 ATGCAGATCTTCGTCAAGACGCTGACTGGCAAGACGATCACGTTGGAAGTTGAGTCGTCC 467617 Query 38304 GACA-GCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | || |||| | || | || |||| || || ||||| || || ||||||| Sbjct 467616 GACACGATTGATAACG-TCAAGGCGAAGATCCAGGATAAGGAGGGCATCCCTCCCGACCA 467558 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| ||||| | ||| ||||| ||| |||| |||| ||||| || || ||||| Sbjct 467557 GCAGCGCCTCATCTTCGCCGGCAAGCAGTTGGAGGACGGCCGCACTCTTTCGGATTACAA 467498 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||| ||||| | ||||| ||| | || ||||| ||| | ||||| Sbjct 467497 CATCCAGAAGGAGTCCACGCTCCATCTCGTCCTGCGCTTGCGTGGCGG 467450 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || ||||| ||||| |||||||| | || || ||| || | Sbjct 468417 ATGCAGATCTTTGTCAAGACACTCACTGGCAAGACCATCACGTTGGAGGTGGAGTCCTCG 468358 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || | || |||| ||||| ||||| || || ||||||| Sbjct 468357 GACACCATCGACAATGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCGCCCGACCAG 468298 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 || || ||||||| || ||||| ||||| || |||| ||||| ||| ||||||||| Sbjct 468297 CAACGCCTCATTTTTGCCGGCAAGCAGCTCGAAGACGGTCGCACTCTCTCGGACTACAAC 468238 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 || || ||||| |||| || || | || || ||| | | |||||| Sbjct 468237 ATTCAGAAGGAGTCGACTCTCCACCTTGTCCTTCGTCTCCGTGGCGGC 468190 >seq524 Length=649165 Score = 118 bits (130), Expect = 1e-21 Identities = 150/204 (74%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || ||||| |||||||| || |||||| | || |||||| || Sbjct 613422 ATGCAGATCTTCGTGAAGACGCTGACGGGCAAGACGATCACCCTGGAGGTCGAGAGCAGT 613363 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | || | || |||| ||||| ||||| || || ||||||| Sbjct 613362 GACACTATCGATAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCGCCCGACCAG 613303 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| || || | ||| ||||| ||||| || |||| ||||| ||| |||||||||| Sbjct 613302 CAGCGTCTGATCTTCGCCGGCAAGCAGCTAGAGGACGGTCGCACTCTCTCCGACTACAAC 613243 Query 38424 ATCCAAAAGGA-AGCGACGCTGCA 38446 || || ||||| ||| ||||| || Sbjct 613242 ATTCAGAAGGAGAGC-ACGCTCCA 613220 Score = 116 bits (128), Expect = 4e-21 Identities = 151/206 (73%), Gaps = 2/206 (1%) Strand=Plus/Minus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 |||||| || || || || || ||||| ||||| |||||||| |||| |||||| ||| Sbjct 613708 AATGCAGATCTTTGTCAAGACCCTCACCGGCAAGACCATCACGCTCGAGGTCGAGTCCAG 613649 Query 38303 CGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 ||||| | | | | | || | || |||| ||||| ||||| || || ||||||| Sbjct 613648 CGACACCATCGATAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCGCCCGACCA 613589 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| || || | || ||||| ||||| || || | ||||| ||| || ||||| Sbjct 613588 GCAGCGCCTGATCTTTGCTGGCAAGCAGCTCGAGGATGGCCGCACGCTCTCTGATTACAA 613529 Query 38423 CATCCAAAAGGA-AGCGACGCTGCAT 38447 |||||| ||||| ||| ||||| ||| Sbjct 613528 CATCCAGAAGGAGAGC-ACGCTCCAT 613504 >seq190 Length=372578 Score = 87.8 bits (96), Expect = 2e-12 Identities = 86/110 (78%), Gaps = 1/110 (1%) Strand=Plus/Plus Query 38351 TCCCGCC-GACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCC 38409 ||||||| ||||| ||||| || || | ||| ||||| ||||| || |||| ||||| | Sbjct 156868 TCCCGCCTGACCAGCAGCGCCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACTC 156927 Query 38410 TCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 || |||||||||||||| || || |||| |||||| |||| || ||| Sbjct 156928 TCTCGGACTACAACATCCAGAAAGAGTCGACTCTGCATCTGGTCCTTCGT 156977 >seq379 Length=286460 Score = 86.0 bits (94), Expect = 6e-12 Identities = 93/122 (76%), Gaps = 1/122 (1%) Strand=Plus/Plus Query 38351 TCCCGCC-GACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCC 38409 ||||||| ||||| ||||| || || | || ||||| |||||||| |||| || || | Sbjct 273123 TCCCGCCCGACCAGCAGCGCCTGATCTTTGCCGGCAAGCAGCTGGAGGACGGCCGGACGC 273182 Query 38410 TCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCG 38469 | |||||||||||||| ||||| |||||||||| | || || ||| || | |||| Sbjct 273183 TGTCGGACTACAACATCCAGAAGGAGTCGACGCTGCACCTTGTCCTCCGTCTGCGTGGCG 273242 Query 38470 GC 38471 || Sbjct 273243 GC 273244 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500169461346560