Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Auricularia_20auricula-judae_20[genbank_20GCA_5F002092955.1_202017- 04-17] 534 sequences; 43,569,032 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq101 244 2e-59 seq124 233 4e-56 seq379 188 1e-42 seq48 123 5e-23 >seq101 Length=461416 Score = 244 bits (270), Expect = 2e-59 Identities = 377/531 (71%), Gaps = 13/531 (2%) Strand=Plus/Minus Query 47858 TTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTCCATGAAGAGGAAGGGGTTG 47917 ||||| |||||||| ||||| |||| || |||||| | ||||||||| |||||| || Sbjct 404218 TTCTCGAAGAAGTTCGTCTTGCCCTGCAGCGAGATCATGTCCATGAAGTCGAAGGGATTC 404159 Query 47918 GGTGTGTTATACACCCGTGTCAG-GCCCATCTGTTCCAGCAGGTGATCCGCGACGTACTC 47976 | | ||| || | | || ||| | | | |||||| | || |||||| |||| Sbjct 404158 GACGAGTTGTAGTGCT-TCTCGTTGCCGAGCGCGACGAGCAGGCGGTCGGCGACGAACTC 404100 Query 47977 GATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGGACACGGGCAAAGCCTTTGT 48036 ||| || | ||| | | ||||||||| ||||| || ||||| | || | || Sbjct 404099 GATATACTGGTTCATCAATTTCGAGTTCATGCCGATGAGCGAGACGGGGAGCGCGTCGGT 404040 Query 48037 GAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATC-TGCTTAACG---CGGGACT 48092 ||| ||||||| ||| |||| |||||| ||| | ||| ||| | | |||| Sbjct 404039 GAGGAACTCCTGCTCGATCTTCACGGCCTCCGTGATGATCGTGCGGACGGTGTCGGGG-- 403982 Query 48093 CTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGCAAAGTCCCTGTGCAAGC 48152 || ||| | ||||| || ||| | |||||| |||||| ||||| |||||| || Sbjct 403981 -TGCGGGCGT-TTGCGGAGATGCGAGA---AGAGCAAGCAGGCGAAGTCGGTGTGCATGC 403927 Query 48153 CTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGACCCCCCTCTGTT 48212 | ||||| || ||||||| ||||||||||| ||| || ||||| | || | || | Sbjct 403926 CCTCGTCGCGCGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGCATCAGGCCGCGCTTCT 403867 Query 48213 TGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCACTGCCGCGAACG 48272 |||||||||| || | |||||| ||||| |||||| |||||||| || || ||||| | Sbjct 403866 TGAGCCAGAAGATGGACGCGAAGGAGCCGCTGAAGAAAATGCCCTCGACGGCGGCGAAGG 403807 Query 48273 CGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATCCAGGAAAGCGCCCAGTCTG 48332 || |||| | ||| ||||||| | || |||||| || |||||| |||||||| || | Sbjct 403806 CGATGAGGCGCTCGCCGAAAGTCGAGTCCTTGTCGGATATCCAGCGCAGCGCCCACTCGG 403747 Query 48333 CCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAGAGCTTCTTGC 48383 |||| ||||||||| || || ||||| ||||| |||||| | || || Sbjct 403746 CCTTGCGCTTGATGCACGGGATGGTCTCGATGGCATCGAAGAGGTGCTCGC 403696 Score = 87.8 bits (96), Expect = 3e-12 Identities = 144/207 (70%), Gaps = 3/207 (1%) Strand=Plus/Minus Query 48454 GATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCTGCACTTCTGTGGAGAATCTCTC 48513 ||| ||||| |||||||| | ||||| ||| || || | ||||| | ||| Sbjct 403557 GATTTGGAAGCCGTAGAAACAGCGCGCCTCTGCGCACTGAACCTCGTTCGAGAAACGCTC 403498 Query 48514 CAGCAGATTCTCATTGACTATCCCATCTGAAGCAGCAAAGAAGGCAAGGACATGTTTAAG 48573 | || ||||| ||||| || || || || || || ||||| || |||| ||| | Sbjct 403497 GACGAGGTTCTCGTTGACGATGCCGTCGGACGCGGCGAAGAACGCGAGGATATGGGAGAT 403438 Query 48574 GAAATGGCGCTCGTTGTGGGTGAGAGCATT---CCAGCCCTGTACGTCTTTGCCCAGGTC 48630 ||||||||||||||||| | |||| || |||| | || |||| ||| |||||| Sbjct 403437 GAAATGGCGCTCGTTGTCGTTGAGTTTGTTCTCCCAGTCGTGCGCGTCCTTGGACAGGTC 403378 Query 48631 CACTTCTTCCACAGTCCAGAAGGACGC 48657 || |||||| | |||||||| || || Sbjct 403377 CATCTCTTCCGCGGTCCAGAATGAAGC 403351 >seq124 Length=448922 Score = 233 bits (258), Expect = 4e-56 Identities = 374/530 (71%), Gaps = 13/530 (2%) Strand=Plus/Minus Query 47842 GTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTCCAT 47901 |||||| ||| | ||||| |||||||| ||||| |||| || |||||| | ||||| Sbjct 289416 GTAGTCGGACACGCGCTTCTCGAAGAAGTTCGTCTTGCCCTGCAGCGAGATCATGTCCAT 289357 Query 47902 GAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAGGCCCATCTGTTCC-AGCAGGT 47960 |||| |||||| || | | ||| || | | || || || | || ||| Sbjct 289356 GAAGTCGAAGGGATTCGACGAGTTGTAGTGCT-TCTCGTTGCCGAGTGCGACGAGGAGGC 289298 Query 47961 GATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGGACA 48020 | ||||||||| |||||||||| | ||| || | ||||||||| |||||||| | Sbjct 289297 GGTCCGCGACGAACTCGATGTACTGGTTCATCAGCTTCGAGTTCATGCCGATGAGGGAGA 289238 Query 48021 CGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATC-TGC 48079 |||| | || | ||||| ||||||| ||| |||| ||| ||||| | ||| ||| Sbjct 289237 CGGGGAGCGCGTCCGTGAGGAACTCCTGCTCGATCTTCACAGCTTCTGTGATGATCATGC 289178 Query 48080 TTAACG---CGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGCA 48136 | | ||||| || ||| ||||| |||||| | |||||| ||| ||| Sbjct 289177 GGACGGTGTCGGGA---TGTGGGCGC-TTGCGGAGGTGCGAGA---AGAGCAGGCACGCA 289125 Query 48137 AAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGC 48196 ||||| |||||| ||| ||||| || ||||||| |||||||||| || || ||| Sbjct 289124 AAGTCGGTGTGCATGCCCTCGTCGCGCGAGATGAGCTCGTTGGAGAACGTCAGGCCGGGC 289065 Query 48197 ATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCC 48256 |||| || | || ||||||||||| || |||||| ||||| |||||| ||||| Sbjct 289064 ATGAGGCCTCGCTTCTTGAGCCAGAAGATGCTCGCGAAGGAGCCGCTGAAGAAAATGCCT 289005 Query 48257 TCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATCCAG 48316 || || || ||||| || |||| | ||| ||||| | | || |||||| ||||||||| Sbjct 289004 TCAACGGCGGCGAAGGCAATGAGGCGCTCGCCGAATGTCGAGTCCTTGTCCGAGATCCAG 288945 Query 48317 GAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGC 48366 || ||||| || ||||| |||||||||||| || ||||| ||||| Sbjct 288944 CGCAGTGCCCACTCGGCCTTGCGCTTGATGCATGGGATAGTCTCGATGGC 288895 >seq379 Length=286460 Score = 188 bits (208), Expect = 1e-42 Identities = 601/916 (66%), Gaps = 37/916 (4%) Strand=Plus/Plus Query 212697 TTCAGGGACTGACTCTGGTCTATGAATGGGGCCCTGTCAGCGGCCATGTCTATGATATCT 212756 |||| | ||| |||||| ||||| | | | | ||| || |||||||| | | | Sbjct 218697 TTCAAGCTCTGGCTCTGGCAAATGAACGCGCCGCGGTCCGCAGCCATGTCGAGCACCTTC 218756 Query 212757 CTCTGGGAGAGCTCCCACACGGTCTTGAAGATTTCTTTGAGGTCCTCTGGGAAGCCGGGG 212816 |||| |||| |||||| ||||||||| |||| | |||| ||| || |||| ||||||| Sbjct 218757 TTCTGCGAGATCTCCCAGACGGTCTTGTAGATGGCCTTGACGTCGTCGGGGATGCCGGGG 218816 Query 212817 ATGTTCTGCACAGACCCCCTGTGT---ATGGTCAGCTGCAGGCGCATGTCCTCGTTCCAG 212873 ||||||||||| || || | || ||| | || | | ||||| |||| ||| Sbjct 218817 ATGTTCTGCACCGAGCCGCCGTTGGCGATGATGAGGTTCTT---CATGTGGTCGTCCCAC 218873 Query 212874 AGGCCCCTGGTCTCCAGGCACTTG-ACCAGGTGAGGGTTGACTATCTGGAAGTCACCTGA 212932 || | | |||| | || | | | ||| ||| || | |||||| || || | Sbjct 218874 AGCCGGC-GGTCGACGAGCTCGCGCAGCAGCCACGGGCACACCACCTGGAACTCGCCCGC 218932 Query 212933 GAGCACCCTCCTCTGGTAAAAGTTTGAAGTGTAGGGCTCGATGCTCTCGTTGTTCCCCAG 212992 |||||| | | | ||| | ||| ||||| ||||||| || ||||||| || || Sbjct 218933 GAGCACGCGGCGCGTGTAGATGTTGCTCGTGTACGGCTCGAAGCACTCGTTGAAGCCGAG 218992 Query 212993 AATCTGTGCAGTGCTGGCTGTGGGCATGGGAGCCACCAGGAGACTGTTCCTCACTCC-GT 213051 ||||| || || || ||||| || |||| || || ||| | || || || Sbjct 218993 GATCTGGCTCGTCGACGCCGTCGGCATCGGCGCCAGCAACAGCGAGTTGCGCAGGCCTGT 219052 Query 213052 GCTCGCCGATGAGGCGCC--GAAGCTCTGCCCAGTCCCATCTGCCAGACAGGTCC-TCGT 213108 || ||| ||| | | || || |||| ||||||||||| ||||||| ||| Sbjct 219053 GCGCGC-GATCTG-CTCCTTGAGGCTC-GCCCAGTCCCA---------CAGGTCCGTCGG 219100 Query 213109 CCTTCACGTTCCACATGTCAAACTGCAAGATGCCTT--TGCTCACGGG-GCTGCCCTGGT 213165 | | ||| ||||| ||| |||||| |||| | ||| || | | || | || Sbjct 219101 CGTG-ACGCCCCACAGGTCGTACTGCAGCCTGCCCTGCTGCGCAGGCGAGCCGACCC--- 219156 Query 213166 AAGAGGAGTAGGGGCCATGCTCCTTGGCCAGCTCGCAGGACGCCTGCAGGGCAGCGTAGT 213225 | | ||| ||||| | || ||| ||||| | ||||||| || || |||| || Sbjct 219157 ACGTCTCGTACGGGCCCTCGCGCTCGGCGAGCTCAGACGACGCCTCGAGCGCGGCGTGGT 219216 Query 213226 AGATGGTTTCAAATATCTCCCTGTTGAGCTTCTTGGCCTCTGGGGACGTGAAGGGCATCA 213285 ||||||| || || |||| ||||||||| ||||| ||| ||| |||| Sbjct 219217 AGATGGTCTCGAAGATCTGGAGGTTGAGCTTGCGCGCCTCCGGGCTGTCGAACGGCAGGC 219276 Query 213286 TCATGCGTTGGAACACATCAGCCAGCCCCTGGACCCCGATGCCGATGGGTCTGTGTCTCA 213345 || | |||| | || || || ||||| || |||||||||||||| | ||| | || Sbjct 219277 GCAGGATCATGAACGCGTCCGCGAGGCCCTGCACGCCGATGCCGATGGGCCGGTGGCGCA 219336 Query 213346 GGTTAGACTTGGAGCACTCCTC---CAAGGGGTAAAAGTTGCAGTCGATGATCTTGTTGA 213402 ||| || || | |||| || |||||| |||| ||||||||||||||| | Sbjct 219337 TGTTGC---TGCGGCGCGCCTCGGGCACGGGGTAGTAGTTCACGTCGATGATCTTGTTCA 219393 Query 213403 GGTTGCGGGTGGCCACTTTGGTGACATGGGCCAGGTACTCGTGATTGAACACGTAGCCCC 213462 ||||||| | | | || |||| ||| | | ||| | || | | | || | Sbjct 219394 GGTTGCGTGCGACGACCTTGGCGACGTCGTGCAGCTTCTGGAAGTCGTACGATTTCTTGT 219453 Query 213463 CGTCCTGCACAAACTCAGGCAGGGCGATGCTGGCCAGGTTGCAAACGGCCACCTCCTGAG 213522 || | ||| || ||||| || || |||||||||||| |||||||| || | | Sbjct 219454 CGGCGGTCACGAAGGACGGCAGCGCAATTGAGGCCAGGTTGCACACGGCCACTTCGTCCG 219513 Query 213523 AGTCTGTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCT 213582 | | |||||| | |||||||||||||||||| | ||| ||||| ||||||| Sbjct 219514 GCGCAGAGTACTCAACGATCTCGGTGCACAGGTTCGACGACTTGATCGTGCCGAGGTTCT 219573 Query 213583 GGTGGTTTGACTTTGC 213598 | ||||| ||||| || Sbjct 219574 GCTGGTTGGACTTGGC 219589 Score = 165 bits (182), Expect = 2e-35 Identities = 266/379 (70%), Gaps = 5/379 (1%) Strand=Plus/Minus Query 213812 GACTCTCTGCATGAACAGGTCCGGGACCCACAGCGCGGTGAACAGGTCCCTGGTCCTCCT 213871 ||| | || |||||| ||||| || | ||| |||||| ||||||||||| | | Sbjct 265001 GACGCGCTTCATGAATAGGTCGGGAATCCAGAGCGCGTAGAACAGGTCCCGCGCGCGGAC 264942 Query 213872 CTCGTCCACTCCAGAGTTTTTGCGCAGATCTAGAAAGTCAAAGATGTCCGCGTGCCACGG 213931 ||| ||| || ||| |||||||| || || || || |||||||||| ||||||||| Sbjct 264941 CTCTTCCTTGCCGTGGTTCTTGCGCAGGTCGAGGAATTCGAAGATGTCCGGGTGCCACGG 264882 Query 213932 CTCCATGTAGATGGCAAAGGCGCCCG---GCCTCTTGCCGCCCTGGTCCACCAGCCTGGC 213988 ||| | |||||||||||| ||||||| || | |||||||| |||||||| | || Sbjct 264881 CTCGAGGTAGATGGCAAACGCGCCCGGGCGCTTGTTGCCGCCTTGGTCCACGTAGCGCGC 264822 Query 213989 CACCATGTTGAAGATGCGCAGGACGGGTACCAGCCCGTTGGACTGTCCGTTGGTTCCCGC 214048 | | | ||| |||||| | ||| || |||||||| ||| ||||| || ||||| Sbjct 264821 CGTCGAATCGAACGCGCGCAGCATGGGCACGAGCCCGTTCGACACGCCGTTCGTGCCCGC 264762 Query 214049 TATATACGAGCCGGAGGCCCTCAGGTTGCTCATGGAGAGCCCTATGCCACCGGCGTACTT 214108 || |||||||| ||| | | |||| ||| || || || || || || ||| Sbjct 264761 GATGTACGAGCCCTTGGCGCGGATGTTGTGAATGTTAAGGCCAATACCGCCCGCACTCTT 264702 Query 214109 GGAGATCATGGCGCAGCGCC-TCACAGTCTCCATGATGCCGGCCATGCTGTCATCTGTGA 214167 | |||||||||||| |||| | | || || |||||| | || ||||| || | | Sbjct 264701 GCTGATCATGGCGCA-CGCCTTGAGCGTGTCGTAGATGCCTTCGATACTGTCGTCCTTCA 264643 Query 214168 GGTTCAGCAAGAAGCAGCT 214186 | || |||||| ||||| Sbjct 264642 TGGCCACCAAGAAACAGCT 264624 Score = 102 bits (112), Expect = 2e-16 Identities = 167/240 (70%), Gaps = 3/240 (1%) Strand=Plus/Plus Query 213887 GTTTTTGCGCAGATCTAGAAAGTCAAAGATGTCCGCGTGCCACGGCTCCATGTAGATGGC 213946 ||| |||||||| || || ||||| || | |||||| ||||||||||| ||||| || || Sbjct 219974 GTTCTTGCGCAGGTCGAGGAAGTCGAACACGTCCGCATGCCACGGCTCGATGTAAATCGC 220033 Query 213947 AAAGGCGCCCGGCCTCTTG---CCGCCCTGGTCCACCAGCCTGGCCACCATGTTGAAGAT 214003 || ||||| || | |||| ||||||||||| || | ||| | || | | Sbjct 220034 GAACGCGCCGGGACGCTTGTTACCGCCCTGGTCGACATAGCGCGCCGTCGAGTCGTACGC 220093 Query 214004 GCGCAGGACGGGTACCAGCCCGTTGGACTGTCCGTTGGTTCCCGCTATATACGAGCCGGA 214063 |||||| | ||| || | |||||| || ||||| || ||||| || |||||||| Sbjct 220094 GCGCAGCATGGGCACGATGCCGTTGCTGTGGCCGTTCGTGCCCGCGATGTACGAGCCCTT 220153 Query 214064 GGCCCTCAGGTTGCTCATGGAGAGCCCTATGCCACCGGCGTACTTGGAGATCATGGCGCA 214123 || | | | | ||| ||| || ||||| ||||| |||| |||||| ||||| Sbjct 220154 CGCGCGAATGCAGTGGATGTTGAGGCCGATGCCGCCGGCCGTCTTGCTGATCATCGCGCA 220213 >seq48 Length=83013 Score = 123 bits (136), Expect = 5e-23 Identities = 269/399 (67%), Gaps = 8/399 (2%) Strand=Plus/Minus Query 213204 GACGCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCCTGTTGAGCTTCTTGGCC 213263 ||||||| || || ||| ||||||||| || || |||| ||||||||| ||| Sbjct 60790 GACGCCTTGAGCGCGGCGCGGTAGATGGTCTCGAAGATCTGGAGGTTGAGCTTGCGCGCC 60731 Query 213264 TCTGGGGACGT-GAAGGGCATCATCATGCGTTGGAACACATCAGCCAGCCCCTGGACCCC 213322 || |||| || ||| |||| || | |||| | || || || ||||| || || Sbjct 60730 TC-GGGGCTGTCGAACGGCAGGCGCAGGATCATGAACGCGTCCGCGAGACCCTGCACGCC 60672 Query 213323 GATGCCGATGGGTCTGTGTCTCAGGTTAGACTTGGAGCACTCCTC---CAAGGGGTAAAA 213379 |||||||||||| | ||| | || ||| || || | |||| || |||||| | Sbjct 60671 GATGCCGATGGGCCGGTGGCGCATGTTGC---TGCGGCGCGCCTCGGGCACGGGGTAGTA 60615 Query 213380 GTTGCAGTCGATGATCTTGTTGAGGTTGCGGGTGGCCACTTTGGTGACATGGGCCAGGTA 213439 ||| ||||||||||||||| |||||||| | | | || |||| ||| | | ||| | Sbjct 60614 GTTCACGTCGATGATCTTGTTCAGGTTGCGCGCGACGACCTTGGCGACGTCGTGCAGCTT 60555 Query 213440 CTCGTGATTGAACACGTAGCCCCCGTCCTGCACAAACTCAGGCAGGGCGATGCTGGCCAG 213499 || | | | || | || || ||| ||| ||||| ||||| |||| Sbjct 60554 CTGGAAGTCGTACGATTTCTTGTCGGCCGTCACGAACGACGGCAGCGCGATCGATGCCAA 60495 Query 213500 GTTGCAAACGGCCACCTCCTGAGAGTCTGTGTACTCCATGATCTCGGTGCACAGGTTGCT 213559 |||||| || || ||||| | | | | ||| || | |||||||||||||||||| Sbjct 60494 GTTGCACACCGCGACCTCGTCCGGCGCAGAGTAGTCAACGATCTCGGTGCACAGGTTCGA 60435 Query 213560 GCATCGGATGGTGCCCAGGTTCTGGTGGTTTGACTTTGC 213598 | ||| ||||| |||||||| ||||| ||||| || Sbjct 60434 CGACTTGATCGTGCCGAGGTTCTGCTGGTTGGACTTGGC 60396 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931526582018560