Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Auricularia_20auricula-judae_20[genbank_20GCA_5F002092955.1_202017- 04-17] 534 sequences; 43,569,032 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq124 174 3e-38 seq101 174 3e-38 seq379 134 3e-26 seq48 123 5e-23 >seq124 Length=448922 Score = 174 bits (192), Expect = 3e-38 Identities = 358/537 (67%), Gaps = 11/537 (2%) Strand=Plus/Plus Query 25786 CTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGCGGTGGGCCATGAAG 25845 ||||||| ||||||||| || || |||||||| | ||||| |||||| || Sbjct 288886 CTGTTTGACGCCATCGAGACTATCCCATGCATCAAGCGCAAGGCCGAGTGGGCACTGCGC 288945 Query 25846 TGGATCAACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAG 25905 |||||| | || | | || || |||||||| || | ||||| || || || || Sbjct 288946 TGGATCTCGGACAAGGACTCGACATTCGGCGAGCGCCTCATTGCCTTCGCCGCCGTTGAA 289005 Query 25906 GGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTCAAGCAGAAGGGGACCATG 25965 ||||| || |||||||| || || ||| |||||||||||||||| || || |||| Sbjct 289006 GGCATTTTCTTCAGCGGCTCCTTCGCGAGCATCTTCTGGCTCAAGAAGCGAGGCCTCATG 289065 Query 25966 CCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGTCTCCACAGAGATTTT 26025 ||||| ||| || ||||||||||||||| | |||||||| | |||| || ||| Sbjct 289066 CCCGGCCTGACGTTCTCCAACGAGCTCATCTCGCGCGACGAGGGCATGCACACCGACTTT 289125 Query 26026 GCCTGCCTGCTCTACACGGGCCACTTGCTCCACAA---ACCTTCTCAAGAGACCGTCTAC 26082 || |||||||||| | || ||| |||| ||| || || || |||||| | Sbjct 289126 GCGTGCCTGCTCTTCTCG---CAC---CTCCGCAAGCGCCCACATCCCGACACCGTCCGC 289179 Query 26083 AGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTTTCNNNNNNNNNNNNNNNNNNNN 26142 | ||||||| ||| |||||| |||||||| ||||||| | Sbjct 289180 ATGATCATCACAGAAGCTGTGAAGATCGAGCAGGAGTTCCTCACGGACGCGCTCCCCGTC 289239 Query 26143 NNNNNNNTGGGCATGAACAACAGACTCATGAGCCAATACATTGAGTATGTGGCCGACCAT 26202 | ||||||||| | || |||| ||| ||||| |||| || || |||| Sbjct 289240 TCCCTCATCGGCATGAACTCGAAGCTGATGAACCAGTACATCGAGTTCGTCGCGGACCGC 289299 Query 26203 CTGCT-GTGCCAGCTGGGACTCGCCAGACTCTACAGTACGCCTAACCCGTTCGACTTTAT 26261 || || || || || || || | | ||||| || | || || |||||||| || Sbjct 289300 CTCCTCGTCGCA-CTCGGCAACGAGAAGCACTACAACTCGTCGAATCCCTTCGACTTCAT 289358 Query 26262 GGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGAAAAGAGGGTCGGCGACTA 26318 ||| | || ||| || | || ||||| |||||||| || ||| | || |||||| Sbjct 289359 GGACATGATCTCGCTGCAGGGCAAGACGAACTTCTTCGAGAAGCGCGTGTCCGACTA 289415 >seq101 Length=461416 Score = 174 bits (192), Expect = 3e-38 Identities = 356/536 (66%), Gaps = 9/536 (2%) Strand=Plus/Plus Query 25786 CTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGCGGTGGGCCATGAAG 25845 || || | |||||||||| ||| || |||||||| | ||||| |||||| || Sbjct 403704 CTCTTCGATGCCATCGAGACCATCCCGTGCATCAAGCGCAAGGCCGAGTGGGCGCTGCGC 403763 Query 25846 TGGATCAACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAG 25905 ||||| | | || | | || || |||||||| || | ||||| || || || ||| Sbjct 403764 TGGATATCCGACAAGGACTCGACTTTCGGCGAGCGCCTCATCGCCTTCGCCGCCGTCGAG 403823 Query 25906 GGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTCAAGCAGAAGGGGACCATG 25965 ||||| || |||||||| || || ||| ||||||||||||||||| || || ||| Sbjct 403824 GGCATTTTCTTCAGCGGCTCCTTCGCGTCCATCTTCTGGCTCAAGAAGCGCGGCCTGATG 403883 Query 25966 CCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGTCTCCACAGAGATTTT 26025 || || || ||| ||||||||||||||| | |||||||| | |||| || || Sbjct 403884 CCGGGCCTCACCTTCTCCAACGAGCTCATCTCGCGCGACGAGGGCATGCACACCGACTTC 403943 Query 26026 GCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAACCTTCTCA---AGAGACCGTCTAC 26082 |||||| |||||| | || || |||| ||||| | || || |||||| | Sbjct 403944 GCCTGCTTGCTCTTCTCG---CA---TCTCCGCAAACGCCCGCACCCCGACACCGTCCGC 403997 Query 26083 AGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTTTCNNNNNNNNNNNNNNNNNNNN 26142 | ||||||| ||||| ||| |||||||| ||||||| | Sbjct 403998 ACGATCATCACGGAGGCCGTGAAGATCGAGCAGGAGTTCCTCACCGACGCGCTCCCCGTC 404057 Query 26143 NNNNNNNTGGGCATGAACAACAGACTCATGAGCCAATACATTGAGTATGTGGCCGACCAT 26202 | ||||||||| | | | |||| ||| || || |||| || ||||||| Sbjct 404058 TCGCTCATCGGCATGAACTCGAAATTGATGAACCAGTATATCGAGTTCGTCGCCGACCGC 404117 Query 26203 CTGCTGTGCCAGCTGGGACTCGCCAGACTCTACAGTACGCCTAACCCGTTCGACTTTATG 26262 ||||| | ||| || || | | ||||| || | || || |||||||| ||| Sbjct 404118 CTGCTCGTCGCGCTCGGCAACGAGAAGCACTACAACTCGTCGAATCCCTTCGACTTCATG 404177 Query 26263 GAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGAAAAGAGGGTCGGCGACTA 26318 || | || ||| || | || ||||| |||||||| || ||| | ||| |||||| Sbjct 404178 GACATGATCTCGCTGCAGGGCAAGACGAACTTCTTCGAGAAGCGCGTCTCCGACTA 404233 >seq379 Length=286460 Score = 134 bits (148), Expect = 3e-26 Identities = 655/1044 (63%), Gaps = 91/1044 (9%) Strand=Plus/Minus Query 221420 AGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTG---GCCTCGGGA 221476 || |||||||||||||||||||| |||||| || |||||| |||| ||||| | Sbjct 265637 AGCGCAGCGTGGTAGATGGTCTCGAAGATCTGCTGGTTGAG---CTTGCGCGCCTCCGCG 265581 Query 221477 GAAGTGAAGGGCATACGCAGCATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGATACCG 221536 |||||||| || ||| | |||||||| || || ||||| || |||| || Sbjct 265580 CTCTCGAAGGGCAGGCGTAGCGCCATGAAGACGTCCGCGAGGCCCTGCACGCCGACGCCA 265521 Query 221537 ATGGGCCTGTGTCTCCTGTTGGAAGCGGC-CGCTTCTGGCACGGGATAAAAGTTGACGTC 221595 ||||||| ||| | | ||||| |||| ||| || || ||||| || |||| ||||| Sbjct 265520 ATGGGCCGGTGGCGCATGTTGCTC-CGGCGCGCCTCGGGGACGGGGTAGTAGTTCACGTC 265462 Query 221596 GATCAGATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTGATT 221655 ||| | |||| ||||| | | | || ||| | | ||| ||||||||| || Sbjct 265461 GATGATCCTGTTCAGGTTGAACGCAACGATTTTCGCGATGTCGTGCAGCTTCTGAAAGTT 265402 Query 221656 GAACACCAACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGCTGGC 221715 | |||| ||||| ||||| | ||| | ||| || | | || Sbjct 265401 GTACAC---------GCCGT--TGGAG-------ATAAACGTCGGTAGAGCGATGGACGC 265360 Query 221716 CAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGGTT 221775 |||||| || ||||| | || || || |||| |||||||| || |||||||| Sbjct 265359 CAGGTTGCAAACGGCGATTTCATCGGGCGAGGAGTACTCGATGATCTCGGTGCAGAGGTT 265300 Query 221776 GCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTG-------------------- 221815 | ||||||| || || |||| | || || |||||| Sbjct 265299 GGACGACTTGATCGTGCCGAGGTTCTGCTGGTTCGACTTGGCTGGAGATGCATGAGCACA 265240 Query 221816 --------------------------CGATTGGCAGCGTCCTTGTAGAGCATAAAGGGAC 221849 | ||| |||||||||||||| ||||| || || | Sbjct 265239 AATCTCGCGGGGCCACGAACTGCTTACCATTCGCAGCGTCCTTGTACAGCATGAACGGCC 265180 Query 221850 CGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAG-TTCTCTGGCGC--TCACCG 221906 | || || || | ||| ||| | ||||| || ||| || |||| | || | ||| Sbjct 265179 CACCGGTTTCGATCTGCGCCTCGAGAATGGCGTACCACAGCTTCTGCGCCGGGATGACCT 265120 Query 221907 TCCTCTTGACTGCACCCTCGGTCTTTTCATACCCGGTATAGAGCATGTCAAACTTTTCAC 221966 ||| | | |||||| ||| || || | ||||||| ||||||| | | Sbjct 265119 TCCGCGCGCG---ACCCTC---CTTCTCGTAGCGTTCATAGAGCGCCTCAAACTCGGCGC 265066 Query 221967 CGTACGCCTCGTCCAGGCCTGGACACCTGG--CGGGACACATCAGACTCCAGTGCTTGTT 222024 || | |||||| ||| || || ||| | |||| || | | ||| | | ||| Sbjct 265065 TGTGCACCTCGTGCAGACCCGGTG-CCTCGTTCGGG-CAGAAGAACGACCAATCCGCGTT 265008 Query 222025 GTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAAAGAGATCTCTGGT 222084 | | ||| | || |||||| ||||| || ||||| ||||| | || || || | | Sbjct 265007 CGCCTCGACGCGCTTCATGAATAGGTCGGGAATCCAGAGCGCGTAGAACAGGTCCCGCGC 264948 Query 222085 CCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAAAAATGTCAGCGTG 222144 || ||| ||| ||||| ||| || | ||| || | || || || ||||| | ||| Sbjct 264947 GCGGACCTCTTCCTTGCCGTGGTTCTTGCGCAGGTCGAGGAATTCGAAGATGTCCGGGTG 264888 Query 222145 CCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTGCCACCCTGATCCACCAT 222204 ||||||||| || |||| ||| | ||||| || ||||||||||| || || ||||| Sbjct 264887 CCACGGCTCGAGGTAGATGGCAAACGCGCCCGGGCGCTTGTTGCCGCCTTGGTCCACGTA 264828 Query 222205 CCTCTCCAGAGCGTTGAAGATGCGAAGGGTCGGTACCAGTCCGTTGGATCGACCGTTGGT 222264 | | || | | ||| ||| || | || || || ||||| || ||||| || Sbjct 264827 GCGCGCCGTCGAATCGAACGCGCGCAGCATGGGCACGAGCCCGTTCGACACGCCGTTCGT 264768 Query 222265 GCCCTTAATGTACGCACCGCCGGCCCTCAGGTT---ACTGGCAGACATGCCGATACCACC 222321 |||| ||||||| || ||| | | ||| | || | | ||| ||||| || Sbjct 264767 GCCCGCGATGTACGAGCCCTTGGCGCGGATGTTGTGAATGTTA---AGGCCAATACCGCC 264711 Query 222322 GGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCATGATGCCCTCCATAGAGTC 222381 || || |||||||||||| |||||| ||||| |||||| || ||| ||| Sbjct 264710 CGCACTCTTGCTGATCATGGCGCACGCCTTGAGCGTGTCGTAGATGCCTTCGATACTGTC 264651 Query 222382 CTCCTTGACGTTCAGCAGAAAACA 222405 ||||| | | || || ||||| Sbjct 264650 GTCCTTCATGGCCACCAAGAAACA 264627 Score = 123 bits (136), Expect = 5e-23 Identities = 275/403 (68%), Gaps = 26/403 (6%) Strand=Plus/Plus Query 221420 AGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTG---GCCTCGGGA 221476 || || ||||||||||||||||| |||||| |||||| |||| ||||| || Sbjct 219204 AGCGCGGCGTGGTAGATGGTCTCGAAGATCTGGAGGTTGAG---CTTGCGCGCCTCCGG- 219259 Query 221477 GAAGT-GAAGGGCATACGCAGCATC-TGAAAGACGTCGGCCAGTCCCTGTACTCCGATAC 221534 | || ||| |||| ||||| ||| |||| | |||| || || ||||| || ||||| | Sbjct 219260 GCTGTCGAACGGCAGGCGCAGGATCATGAACG-CGTCCGCGAGGCCCTGCACGCCGATGC 219318 Query 221535 CGATGGGCCTGTGTCTCCTGTTGGAAGCGGC-CGCTTCTGGCACGGGATAAAAGTTGACG 221593 ||||||||| ||| | | |||| | ||||| ||| || |||||||| || |||| ||| Sbjct 219319 CGATGGGCCGGTGGCGCATGTT-GCTGCGGCGCGCCTCGGGCACGGGGTAGTAGTTCACG 219377 Query 221594 TCGATCAGATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTGA 221653 ||||| | ||||| ||||| | | || ||| || | || ||| |||||||||| Sbjct 219378 TCGATGATCTTGTTCAGGTTGCGTGCGACGACCTTGGCGACGTCGTGCAGCTTCTGG--- 219434 Query 221654 TTGAACACCAACTCG-CCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGCT 221712 || ||| || || || || | | ||| || | || |||| Sbjct 219435 ---------AAGTCGTACGATTTCTTGTCGGCGGT-CACGAAGGACGGCAGCGCAATTGA 219484 Query 221713 GGCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAG 221772 ||||||||| ||||||||||| |||||| | |||| | |||||| || || || Sbjct 219485 GGCCAGGTTGCACACGGCCACTTCGTCCGGCGCAGAGTACTCAACGATCTCGGTGCACAG 219544 Query 221773 GTTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTG 221815 ||| ||||||| || || |||| | || || |||||| Sbjct 219545 GTTCGACGACTTGATCGTGCCGAGGTTCTGCTGGTTGGACTTG 219587 >seq48 Length=83013 Score = 123 bits (136), Expect = 5e-23 Identities = 175/237 (74%), Gaps = 12/237 (5%) Strand=Plus/Minus Query 221420 AGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTG---GCCTCGGGA 221476 || || ||| ||||||||||||| |||||| |||||| |||| |||||||| Sbjct 60781 AGCGCGGCGCGGTAGATGGTCTCGAAGATCTGGAGGTTGAG---CTTGCGCGCCTCGGG- 60726 Query 221477 GAAGT-GAAGGGCATACGCAGCATC-TGAAAGACGTCGGCCAGTCCCTGTACTCCGATAC 221534 | || ||| |||| ||||| ||| |||| | |||| || || ||||| || ||||| | Sbjct 60725 GCTGTCGAACGGCAGGCGCAGGATCATGAACG-CGTCCGCGAGACCCTGCACGCCGATGC 60667 Query 221535 CGATGGGCCTGTGTCTCCTGTTGGAAGCGGC-CGCTTCTGGCACGGGATAAAAGTTGACG 221593 ||||||||| ||| | | |||| | ||||| ||| || |||||||| || |||| ||| Sbjct 60666 CGATGGGCCGGTGGCGCATGTT-GCTGCGGCGCGCCTCGGGCACGGGGTAGTAGTTCACG 60608 Query 221594 TCGATCAGATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGG 221650 ||||| | ||||| ||||| | | || ||| || | || ||| |||||||||| Sbjct 60607 TCGATGATCTTGTTCAGGTTGCGCGCGACGACCTTGGCGACGTCGTGCAGCTTCTGG 60551 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928838599960960