Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Auricularia_20auricula-judae_20[genbank_20GCA_5F002092955.1_202017- 04-17] 534 sequences; 43,569,032 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq379 134 1e-26 seq524 105 6e-18 seq57 105 6e-18 >seq379 Length=286460 Score = 134 bits (148), Expect = 1e-26 Identities = 322/482 (67%), Gaps = 10/482 (2%) Strand=Plus/Minus Query 138507 GACCTGAAATTCACCGGCCAATACTCGACGAACGTAAATGTTGTTGGTGAAAGGCTCAAA 138566 || ||| || || || || | || || || ||| |||||| | ||| | ||||| || Sbjct 265926 GATCTGGAACTCGCCCGCGAGGACGCGGCGCGTGTAGATGTTGCTCGTGTACGGCTCGAA 265867 Query 138567 CGATTCGTTGTTTCCCAGAATCTGAGCCGTGGTCGCGGTCGGCATGTACGCCACCAAAAG 138626 | |||||| ||||| ||||| ||| ||||||||||||| ||| | || || Sbjct 265866 GCACTCGTTGAAGCCCAGGATCTGGCTCGTCCCCGCGGTCGGCATGGGCGCGAGCAGGAG 265807 Query 138627 AGAATTCCGTAAACC-GTGAAGCTTGATTCGTTCCTTGAGCGACGACCAGTCCCACAAAT 138685 || || || | ||| ||| || ||| |||||||| || ||||||||| | | Sbjct 265806 CGAGTTGCGCAGACCTGTGC-GCGCGATCTTCTCCTTGAGGCTCGCCCAGTCCCAGAGGT 265748 Query 138686 CGCTAGGTTTTTTGTTCCACATATCGTACTGTAACATTCCCAAACTTGCGGGACTGCCTT 138745 || | || | ||||| |||||||| | | | ||| ||||| ||| Sbjct 265747 CGGTGGGCGTGACACCCCACAGGTCGTACTGCAGCTTGCCCTGCTGCGCGGGCGAGCCCA 265688 Query 138746 CGTACGAATCGTATACACCAAACTCTTGCGCCAACTCGTTGCTCGCCTCGAGCGCACCAT 138805 | ||| ||||| ||| | ||||| |||| ||||||||||||||||| | | Sbjct 265687 CCCACGTCTCGTAGGGCCCATCCGTCGCCGCCATCTCGCTGCTCGCCTCGAGCGCAGCGT 265628 Query 138806 AGTAAATAGTTTCGGCAATCTGCTGATTGAGCAATCGGGCCTCGGCGCTCTCGTACGGCA 138865 ||| || || ||| |||||||| |||||| || ||||| ||||||||| | |||| Sbjct 265627 GGTAGATGGTCTCGAAGATCTGCTGGTTGAGCTTGCGCGCCTCCGCGCTCTCGAAGGGCA 265568 Query 138866 TGCGGAGCATCGTGAACGCGTCGGCCAGCCCTTGCACGCCCACTCCGACAGGGCGATGGC 138925 ||| ||| | |||| |||| || || || |||||||| || || | || || |||| Sbjct 265567 GGCGTAGCGCCATGAAGACGTCCGCGAGGCCCTGCACGCCGACGCCAATGGGCCGGTGGC 265508 Query 138926 GCAGATTTGACGCTTTTGCG-GCTTC---GATAGGATAATAGTTTACATCGATGATTTTG 138981 ||| || ||| ||| || || || || || ||||| || |||||||| || Sbjct 265507 GCA----TGTTGCTCCGGCGCGCCTCGGGGACGGGGTAGTAGTTCACGTCGATGATCCTG 265452 Query 138982 TT 138983 || Sbjct 265451 TT 265450 Score = 114 bits (126), Expect = 1e-20 Identities = 332/505 (66%), Gaps = 16/505 (3%) Strand=Plus/Plus Query 138508 ACCTGAAATTCACCGGCCAATACTCGACGAACGTAAATGTTGTTGGTGAAAGGCTCAAAC 138567 ||||| || || || || | || || || ||| |||||| | ||| | ||||| || Sbjct 218916 ACCTGGAACTCGCCCGCGAGCACGCGGCGCGTGTAGATGTTGCTCGTGTACGGCTCGAAG 218975 Query 138568 GATTCGTTGTTTCCCAGAATCTGAGCCGTGGTCGCGGTCGGCATGTACGCCACCAAAAGA 138627 | |||||| || || ||||| ||| | ||| |||||||| ||||| ||| || Sbjct 218976 CACTCGTTGAAGCCGAGGATCTGGCTCGTCGACGCCGTCGGCATCGGCGCCAGCAACAGC 219035 Query 138628 GAATTCCGTAAACC-GTGAAGCTTGATTCGTTCCTTGAGCGACGACCAGTCCCACAAATC 138686 || || || | || ||| || ||| | |||||||| || ||||||||||| || Sbjct 219036 GAGTTGCGCAGGCCTGTGC-GCGCGATCTGCTCCTTGAGGCTCGCCCAGTCCCACAGGTC 219094 Query 138687 GCTAGGTTTTTTGTTCCACATATCGTACTGTAACATTCCCAAACTTGCGGGACTGCCTTC 138746 | || | | ||||| |||||||| | | | ||| || || ||| | Sbjct 219095 CGTCGGCGTGACGCCCCACAGGTCGTACTGCAGCCTGCCCTGCTGCGCAGGCGAGCCGAC 219154 Query 138747 GTACGAATCGTATACACCAAACTCTTGC---GCCAACTCGTTGCTCGCCTCGAGCGCACC 138803 ||| ||||| || ||| || || | ||| |||||||||||| | Sbjct 219155 CCACGTCTCGTACGGGCC---CTCGCGCTCGGCGAGCTCAGACGACGCCTCGAGCGCGGC 219211 Query 138804 ATAGTAAATAGTTTCGGCAATCTGCTGATTGAGCAATCGGGCCTCGGCGCTCTCGTACGG 138863 | ||| || || ||| ||||| | |||||| || ||||| | ||| ||| |||| Sbjct 219212 GTGGTAGATGGTCTCGAAGATCTGGAGGTTGAGCTTGCGCGCCTCCGGGCTGTCGAACGG 219271 Query 138864 CATGCGGAGCATCGTGAACGCGTCGGCCAGCCCTTGCACGCCCACTCCGACAGGGCGATG 138923 || ||| || ||| |||||||||| || || || |||||||| | |||| || || || Sbjct 219272 CAGGCGCAGGATCATGAACGCGTCCGCGAGGCCCTGCACGCCGATGCCGATGGGCCGGTG 219331 Query 138924 GCGCAGATTTGACGCTTTTGCG-GCTTCG---ATAGGATAATAGTTTACATCGATGATTT 138979 ||||| || ||| ||| || ||| | || || ||||| || |||||||| | Sbjct 219332 GCGCA----TGTTGCTGCGGCGCGCCTCGGGCACGGGGTAGTAGTTCACGTCGATGATCT 219387 Query 138980 TGTTTAAATTTCGCACGACCACCTT 139004 |||| | || || |||| ||||| Sbjct 219388 TGTTCAGGTTGCGTGCGACGACCTT 219412 >seq524 Length=649165 Score = 105 bits (116), Expect = 6e-18 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || || ||||| || || || |||||||| || || ||| | Sbjct 613707 ATGCAGATCTTTGTCAAGACCCTCACCGGCAAGACCATCACGCTCGAGGTCGAGTCCAGC 613648 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| ||||| || || || || ||||| || Sbjct 613647 GACACCATCGATAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCGCCCGACCAG 613588 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || |||||||||| || || ||||| |||||| | | | || ||||| ||| Sbjct 613587 CAGCGCCTGATCTTTGCTGGCAAGCAGCTCGAGGATGGCCGCACGCTCTCTGATTACAAC 613528 Query 24884 ATTCAAAAGGA 24894 || || ||||| Sbjct 613527 ATCCAGAAGGA 613517 Score = 98.7 bits (108), Expect = 9e-16 Identities = 164/231 (71%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || ||| | ||||| || || || || || ||||| || || | Sbjct 613143 ATGCAGATCTTTGTCAAGACGTTGACCGGGAAGACCATCACCCTGGAAGTCGAGTCCTCG 613084 Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || |||| || | ||| ||||| || || || || || || ||||| || Sbjct 613083 GACACGATTGACAACGTCAAGGCGAAA-ATCCAGGATAAGGAGGGGATCCCGCCCGACCA 613025 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGA--TTCGAGAAACATGTCAGATTAT 24880 || || ||||| || ||||| || || || ||||| ||| || | |||| ||||| Sbjct 613024 GCAGCGCTTGATTTTCGCCGGCAAGCAACTCGAGGACGGTCG-GACGC-TGTCCGATTAC 612967 Query 24881 AACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || || || ||||| || || || ||| | || |||| |||| || ||| Sbjct 612966 AATATCCAGAAGGAGTCCACGCTGCACCTTGTTCTGCGCCTGCGTGGTGGC 612916 Score = 84.2 bits (92), Expect = 2e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || ||||| || || || || || || || || || || || Sbjct 613422 ATGCAGATCTTCGTGAAGACGCTGACGGGCAAGACGATCACCCTGGAGGTCGAGAGCAGT 613363 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| ||||| || || || || ||||| || Sbjct 613362 GACACTATCGATAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCGCCCGACCAG 613303 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| ||||||| ||||| || ||||| ||||| | | | || || || ||| Sbjct 613302 CAGCGTCTGATCTTCGCCGGCAAGCAGCTAGAGGACGGTCGCACTCTCTCCGACTACAAC 613243 Query 24884 ATTCAAAAGGA 24894 ||||| ||||| Sbjct 613242 ATTCAGAAGGA 613232 >seq57 Length=599116 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || || |||| || || ||||| || || || ||||| || || || | || Sbjct 467904 ATGCAAATATTCGTTAAGACACTCACCGGCAAGACGATCACGCTGGAGGTCGAGTCGTCC 467845 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || ||| |||||||| ||||| || || || || || || || Sbjct 467844 GACACGATCGACAACGTCAAAGCGAAGATCCAGGACAAGGAGGGCATTCCACCTGACCAG 467785 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || | ||||||||||| || ||||| |||||| | | | || ||||| ||| Sbjct 467784 CAGCGCCTTATCTTTGCCGGCAAGCAGCTCGAGGATGGCCGCACTCTTTCGGATTACAAC 467725 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || || ||||| |||||||| || | || | || ||||||| ||| Sbjct 467724 ATCCAGAAGGAGTCGACACTGCATCTCGTCCTTCGTCTGCGCGGCGGC 467677 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || ||||| || || || || || ||| | ||||| || | || Sbjct 467676 ATGCAGATCTTCGTCAAGACGCTGACTGGCAAGACGATCACGTTGGAAGTTGAGTCGTCC 467617 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| || || || || || |||||||| || Sbjct 467616 GACACGATTGATAACGTCAAGGCGAAGATCCAGGATAAGGAGGGCATCCCTCCCGACCAG 467557 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || | ||||| ||||| || ||| ||||||| | | | || ||||| ||| Sbjct 467556 CAGCGCCTCATCTTCGCCGGCAAGCAGTTGGAGGACGGCCGCACTCTTTCGGATTACAAC 467497 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || ||||| || || || || | || |||| ||||| || || Sbjct 467496 ATCCAGAAGGAGTCCACGCTCCATCTCGTCCTGCGCTTGCGTGGCGG 467450 Score = 89.7 bits (98), Expect = 5e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || || || || || || || ||| | || || || || | Sbjct 468417 ATGCAGATCTTTGTCAAGACACTCACTGGCAAGACCATCACGTTGGAGGTGGAGTCCTCG 468358 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| ||||| || || || || ||||| || Sbjct 468357 GACACCATCGACAATGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCGCCCGACCAG 468298 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||||| | || |||||||| || ||||| || || | | | || || || ||| Sbjct 468297 CAACGCCTCATTTTTGCCGGCAAGCAGCTCGAAGACGGTCGCACTCTCTCGGACTACAAC 468238 Query 24884 ATTCAAAAGGAATCGACACTACAC 24907 ||||| ||||| ||||| || ||| Sbjct 468237 ATTCAGAAGGAGTCGACTCTCCAC 468214 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449894596933520