Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Auricularia_20auricula-judae_20[genbank_20GCA_5F002092955.1_202017- 04-17] 534 sequences; 43,569,032 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq57 136 8e-27 seq524 131 3e-25 >seq57 Length=599116 Score = 136 bits (150), Expect = 8e-27 Identities = 171/235 (73%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 82576 ATCACCTACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTAT 82635 ||||| ||| || | ||| ||||| || | || || || || || ||||| || || | Sbjct 467442 ATCACAGACCGCCACGCAAGCGCAGGACGAGATGGAGCGTGGACTCCTTCTGGATGTTGT 467501 Query 82636 AATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGAT 82695 |||| || ||| | | ||||| || | || || || || ||||| || | || || | Sbjct 467502 AATCCGAAAGAGTGCGGCCGTCCTCCAACTGCTTGCCGGCGAAGATGAGGCGCTGCTGGT 467561 Query 82696 CTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAG 82755 | ||||| || || |||||||| || ||||| || || || || |||||||| || | Sbjct 467562 CGGGAGGGATGCCCTCCTTATCCTGGATCTTCGCCTTGACGTTATCAATCGTGTCGGACG 467621 Query 82756 GTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || |||||||| || ||||||||||| |||| |||||| || || |||||||| Sbjct 467622 ACTCAACTTCCAACGTGATCGTCTTGCCAGTCAGCGTCTTGACGAAGATCTGCAT 467676 Score = 107 bits (118), Expect = 4e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || || | || ||| || || | ||||| || || || ||||| || || ||||| || Sbjct 467678 CCGCCGCGCAGACGAAGGACGAGATGCAGTGTCGACTCCTTCTGGATGTTGTAATCCGAA 467737 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 ||| | | || || || || || || || |||||||| || | || || || || || Sbjct 467738 AGAGTGCGGCCATCCTCGAGCTGCTTGCCGGCAAAGATAAGGCGCTGCTGGTCAGGTGGA 467797 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || || ||||| || || ||||| ||||| || || || ||||| || | || || Sbjct 467798 ATGCCCTCCTTGTCCTGGATCTTCGCTTTGACGTTGTCGATCGTGTCGGACGACTCGACC 467857 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||| || ||||||||||| || | ||||| || ||||| ||||| Sbjct 467858 TCCAGCGTGATCGTCTTGCCGGTGAGTGTCTTAACGAATATTTGCAT 467904 >seq524 Length=649165 Score = 131 bits (144), Expect = 3e-25 Identities = 158/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 |||||||| | |||||| || || || ||||| ||||| ||||| || || | | |||| Sbjct 612929 CGCAGAACAAGGTGCAGCGTGGACTCCTTCTGGATATTGTAATCGGACAGCGTCCGACCG 612988 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 || || ||||| || || || || || | | || || || || || || || |||||| Sbjct 612989 TCCTCGAGTTGCTTGCCGGCGAAAATCAAGCGCTGCTGGTCGGGCGGGATCCCCTCCTTA 613048 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 || || || || || || || || |||||||| || | || ||||||| || || Sbjct 613049 TCCTGGATTTTCGCCTTGACGTTGTCAATCGTGTCCGAGGACTCGACTTCCAGGGTGATG 613108 Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||| || ||||||||||| ||||| |||||||| Sbjct 613109 GTCTTCCCGGTCAACGTCTTGACAAAGATCTGCAT 613143 Score = 111 bits (122), Expect = 3e-19 Identities = 139/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 82620 TCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAG 82679 || ||||| || || || || || ||| | | |||||| ||||| || || || || ||| Sbjct 613232 TCCTTCTGAATGTTGTAGTCGGAGAGAGTGCGACCGTCCTCTAGCTGCTTGCCGGCGAAG 613291 Query 82680 ATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTT 82739 || || | || || || || || || || ||||| || || ||||| || || ||||| Sbjct 613292 ATCAGACGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTA 613351 Query 82740 TCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACA 82799 || || || ||| | || || |||| || ||||||||||| |||| |||||| || Sbjct 613352 TCGATAGTGTCACTGCTCTCGACCTCCAGGGTGATCGTCTTGCCCGTCAGCGTCTTCACG 613411 Query 82800 AATATCTGCAT 82810 || |||||||| Sbjct 613412 AAGATCTGCAT 613422 Score = 98.7 bits (108), Expect = 2e-15 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 82620 TCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAG 82679 || ||||| || || |||||||| || | | || || || || || || ||||||||| Sbjct 613517 TCCTTCTGGATGTTGTAATCAGAGAGCGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAG 613576 Query 82680 ATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTT 82739 || || | || || || || || || || ||||| || || ||||| || || ||||| Sbjct 613577 ATCAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTA 613636 Query 82740 TCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACA 82799 || || || || | | || || || | || || |||||||| || | ||||| ||| Sbjct 613637 TCGATGGTGTCGCTGGACTCGACCTCGAGCGTGATGGTCTTGCCGGTGAGGGTCTTGACA 613696 Query 82800 AATATCTGCATT 82811 || ||||||||| Sbjct 613697 AAGATCTGCATT 613708 Score = 87.8 bits (96), Expect = 4e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 82620 TCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAG 82679 || ||||| ||||| || || || || | | ||||| || ||||| || || || || Sbjct 612725 TCCTTCTGGATATTGTAGTCGGAAAGCGTGCGCCCGTCCTCGAGTTGCTTGCCGGCGAAA 612784 Query 82680 ATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTT 82739 || || | || || || || || ||||||||||| || || || || || || || || Sbjct 612785 ATAAGACGCTGCTGGTCGGGCGGGATTCCTTCCTTGTCCTGGATTTTCGCCTTGACGTTG 612844 Query 82740 TCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACA 82799 || |||||||| | || || || | || || |||||||| || | |||||| || Sbjct 612845 TCGATCGTATCGGAGGACTCGACCTCGAGCGTGATTGTCTTGCCAGTAAGCGTCTTGACG 612904 Query 82800 AATATCTGCAT 82810 || || ||||| Sbjct 612905 AAAATTTGCAT 612915 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981820482461026