Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Auricularia_20auricula-judae_20[genbank_20GCA_5F002092955.1_202017- 04-17] 534 sequences; 43,569,032 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq524 125 4e-24 seq57 96.9 2e-15 >seq524 Length=649165 Score = 125 bits (138), Expect = 4e-24 Identities = 154/209 (74%), Gaps = 10/209 (5%) Strand=Plus/Plus Query 34504 TGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGT 34563 ||||| ||||||||||| |||||||| || || || || || || |||| || || || Sbjct 613220 TGGAGCGTGCTCTCCTTCTGAATGTTGTAGTCGGAGAGAGTGCGACCGTCCTCTAGCTGC 613279 Query 34564 TTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTT- 34622 || ||||| || || | |||||| ||||| ||||| | ||||||||||| |||||| Sbjct 613280 TTGCCGGCGAAGATCAGACGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGGATCTTG 613339 Query 34623 ---TTG-TTTTAACGATAAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTAC 34678 ||| ||| ||||| ||||| |||||| || |||| ||| ||||| || | Sbjct 613340 GCCTTGACATTATCGATA-----GTGTCACTGCTCTCGACCTCCAGGGTGATCGTCTTGC 613394 Query 34679 CGGTTAACGTTTTCACAAAAATCTGCATG 34707 | || | ||| ||||| || ||||||||| Sbjct 613395 CCGTCAGCGTCTTCACGAAGATCTGCATG 613423 Score = 96.9 bits (106), Expect = 2e-15 Identities = 151/212 (71%), Gaps = 3/212 (1%) Strand=Plus/Plus Query 34498 ACCAA-ATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTC 34556 ||||| ||| || ||||||||||| || || || || || ||||| || ||| |||| || Sbjct 612706 ACCAAGATGCAGCGTGCTCTCCTTCTGGATATTGTAGTCGGAAAGCGTGCGCCCGTCCTC 612765 Query 34557 AAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGT 34616 ||||| || ||||| || || | |||||| ||||| ||||| | ||| |||||||| Sbjct 612766 GAGTTGCTTGCCGGCGAAAATAAGACGCTGCTGGTCGGGCGGGATTCCTTCCTTGTCCTG 612825 Query 34617 GATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTT 34675 ||| ||| | || ||| | || || || | ||| || || | || || || | Sbjct 612826 GAT-TTTCGCCTTGACGTTGTCGATCGTATCGGAGGACTCGACCTCGAGCGTGATTGTCT 612884 Query 34676 TACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 | || || | ||| || || ||||| |||||| Sbjct 612885 TGCCAGTAAGCGTCTTGACGAAAATTTGCATG 612916 Score = 93.3 bits (102), Expect = 3e-14 Identities = 145/205 (71%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 34503 ATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTG 34562 |||||| ||||||||||| || ||||| ||||| || || || || | || || || || Sbjct 613504 ATGGAGCGTGCTCTCCTTCTGGATGTTGTAATCAGAGAGCGTGCGGCCATCCTCGAGCTG 613563 Query 34563 TTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTT 34622 || || ||||| || | ||||| ||||| ||||| | ||||||||||| |||| | Sbjct 613564 CTTGCCAGCAAAGATCAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGGATC-T 613622 Query 34623 TTGTTTTAACGATA-AAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGG 34681 | | || || || || ||||| | ||| || || | || || || || |||| Sbjct 613623 TGGCCTTGACATTATCGATGGTGTCGCTGGACTCGACCTCGAGCGTGATGGTCTTGCCGG 613682 Query 34682 TTAACGTTTTCACAAAAATCTGCAT 34706 | | || || ||||| |||||||| Sbjct 613683 TGAGGGTCTTGACAAAGATCTGCAT 613707 >seq57 Length=599116 Score = 96.9 bits (106), Expect = 2e-15 Identities = 161/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 |||||| | ||||| | || | |||||||| |||||| |||||||| || || || Sbjct 468190 GCCGCCACGGAGACGAAGGACAAGGTGGAGAGTCGACTCCTTCTGAATGTTGTAGTCCGA 468249 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 || || || ||||||| || || || |||||||| || | || || ||||| ||||| Sbjct 468250 GAGAGTGCGACCGTCTTCGAGCTGCTTGCCGGCAAAAATGAGGCGTTGCTGGTCGGGCGG 468309 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCA 34657 | ||||||||||| |||| || | || || | || ||||| | ||||| Sbjct 468310 GATGCCCTCCTTGTCCTGGATC-TTCGCCTTCACATTGTCGATGGTGTCCGAGGACTCCA 468368 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 | |||| || || || || || || | || || ||||| ||||||||| Sbjct 468369 CCTCCAACGTGATGGTCTTGCCAGTGAGTGTCTTGACAAAGATCTGCATG 468418 Score = 86.0 bits (94), Expect = 4e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 |||||| | ||||| | || | ||| || || |||||| || ||||| ||||| || Sbjct 467677 GCCGCCGCGCAGACGAAGGACGAGATGCAGTGTCGACTCCTTCTGGATGTTGTAATCCGA 467736 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 ||| || || | || || || || || |||||||| || | ||||| ||||| || || Sbjct 467737 AAGAGTGCGGCCATCCTCGAGCTGCTTGCCGGCAAAGATAAGGCGCTGCTGGTCAGGTGG 467796 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCA 34657 | ||||||||||| |||| || | ||| ||| | || ||||| ||| | Sbjct 467797 AATGCCCTCCTTGTCCTGGATC-TTCGCTTTGACGTTGTCGATCGTGTCGGACGACTCGA 467855 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 | |||| || ||||| || ||||| | || || || || || ||||| Sbjct 467856 CCTCCAGCGTGATCGTCTTGCCGGTGAGTGTCTTAACGAATATTTGCAT 467904 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314727551700422