Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Auricularia_20auricula-judae_20[genbank_20GCA_5F002092955.1_202017- 04-17] 534 sequences; 43,569,032 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq524 138 1e-27 seq57 132 4e-26 >seq524 Length=649165 Score = 138 bits (152), Expect = 1e-27 Identities = 171/234 (73%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 26984 CGCCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACC 27043 || ||||||||| ||||| || || ||||||| ||| | || || || ||||| || | Sbjct 613147 CGGCATGCAGATCTTTGTCAAGACGTTGACCGGGAAGACCATCACCCTGGAAGTCGAGTC 613088 Query 27044 GTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGA 27103 || ||| ||||||| | ||||| ||||| || || || || || || || ||||| Sbjct 613087 CTCGGACACGATTGACAACGTCAAGGCGAAAATCCAGGATAAGGAGGGGATCCCGCCCGA 613028 Query 27104 TCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTA 27163 || ||||| || || | ||||||||| ||| | || ||| || ||| | |||||||| Sbjct 613027 CCAGCAGCGCTTGATTTTCGCCGGCAAGCAACTCGAGGACGGTCGGACGCTGTCCGATTA 612968 Query 27164 CAACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| || || |||||||| || | || | ||| |||| |||| |||||||| Sbjct 612967 CAATATCCAGAAGGAGTCCACGCTGCACCTTGTTCTGCGCCTGCGTGGTGGCAT 612914 Score = 95.1 bits (104), Expect = 1e-14 Identities = 141/198 (71%), Gaps = 4/198 (2%) Strand=Plus/Minus Query 26984 CGCCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAA-- 27041 || ||||||||| || || || || ||||| |||||| | || || || || || || Sbjct 613426 CGGCATGCAGATCTTCGTGAAGACGCTGACGGGCAAGACGATCACCCTGGAGGTCGAGAG 613367 Query 27042 CCGTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCC 27101 | || ||| | || || | ||||| || || || ||||| || ||||| || ||| Sbjct 613366 CAGT--GACACTATCGATAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCGCCC 613309 Query 27102 GATCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGAT 27161 || || |||||| | || | ||||||||| || | || ||| || || | ||||| Sbjct 613308 GACCAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTAGAGGACGGTCGCACTCTCTCCGAC 613249 Query 27162 TACAACATTCAAAAGGAG 27179 ||||||||||| |||||| Sbjct 613248 TACAACATTCAGAAGGAG 613231 >seq57 Length=599116 Score = 132 bits (146), Expect = 4e-26 Identities = 168/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 26984 CGCCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACC 27043 || ||||||||| || || || || ||||| |||||| | || || | ||||| || | Sbjct 467680 CGGCATGCAGATCTTCGTCAAGACGCTGACTGGCAAGACGATCACGTTGGAAGTTGAGTC 467621 Query 27044 GTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGA 27103 ||||||| ||||||| | ||||| || || || || || || ||||| || ||||| Sbjct 467620 GTCCGACACGATTGATAACGTCAAGGCGAAGATCCAGGATAAGGAGGGCATCCCTCCCGA 467561 Query 27104 TCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTA 27163 || ||||| | || | ||||||||| || ||||| ||| | || |||| ||||| Sbjct 467560 CCAGCAGCGCCTCATCTTCGCCGGCAAGCAGTTGGAGGACGGCCGCACTCTTTCGGATTA 467501 Query 27164 CAACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 |||||| || |||||||| || | ||| | || |||| ||||| || || Sbjct 467500 CAACATCCAGAAGGAGTCCACGCTCCATCTCGTCCTGCGCTTGCGTGGCGG 467450 Score = 122 bits (134), Expect = 8e-23 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| ||||| || || || || ||||||||| | || || || || || || ||||| Sbjct 467904 ATGCAAATATTCGTTAAGACACTCACCGGCAAGACGATCACGCTGGAGGTCGAGTCGTCC 467845 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| |||| || | |||||| || || || ||||| || ||||| ||||| || || Sbjct 467844 GACACGATCGACAACGTCAAAGCGAAGATCCAGGACAAGGAGGGCATTCCACCTGACCAG 467785 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| | || | |||||||| || | || || | || |||| ||||||||| Sbjct 467784 CAGCGCCTTATCTTTGCCGGCAAGCAGCTCGAGGATGGCCGCACTCTTTCGGATTACAAC 467725 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || ||||||||||| | ||| | || | ||| |||| || ||||| Sbjct 467724 ATCCAGAAGGAGTCGACACTGCATCTCGTCCTTCGTCTGCGCGGCGGCAT 467675 Score = 102 bits (112), Expect = 7e-17 Identities = 143/201 (71%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 26984 CGCCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACC 27043 || |||||| || || || || || ||||| |||||| | || || || || ||||| | Sbjct 468193 CGGCATGCAAATCTTCGTCAAGACACTGACGGGCAAGACCATCACGCTGGAGGTGGAGTC 468134 Query 27044 GTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGA 27103 || ||| | || || | || || || || || ||||| |||||||| || || || Sbjct 468133 TTCGGACACCATCGACAACGTGAAGGCGAAGATCCAGGACAAGGAAGGCATCCCGCCAGA 468074 Query 27104 TCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTA 27163 || ||||| | || | ||||||||| || | |||||| || || |||| || || Sbjct 468073 CCAGCAGCGCCTCATTTTCGCCGGCAAGCAGCTCGAAGACGGTCGCACTCTTTCGGACTA 468014 Query 27164 CAACATTCAAAAGGAGTCGAC 27184 ||||| || ||||||||||| Sbjct 468013 TAACATCCAGAAGGAGTCGAC 467993 Score = 98.7 bits (108), Expect = 9e-16 Identities = 162/234 (69%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 26984 CGCCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACC 27043 || ||||||||| ||||| || || || || |||||| | || || | || ||||| | Sbjct 468421 CGGCATGCAGATCTTTGTCAAGACACTCACTGGCAAGACCATCACGTTGGAGGTGGAGTC 468362 Query 27044 GTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGA 27103 || ||| | || || | || || || || || ||||| || ||||| || ||||| Sbjct 468361 CTCGGACACCATCGACAATGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCGCCCGA 468302 Query 27104 TCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTA 27163 || || || | || | |||||||| || | |||||| || || | || || || Sbjct 468301 CCAGCAACGCCTCATTTTTGCCGGCAAGCAGCTCGAAGACGGTCGCACTCTCTCGGACTA 468242 Query 27164 CAACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||||||| ||||||||||| | || | || | ||| | || || ||||| Sbjct 468241 CAACATTCAGAAGGAGTCGACTCTCCACCTTGTCCTTCGTCTCCGTGGCGGCAT 468188 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434915496919680