Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Auricularia_20auricula-judae_20[genbank_20GCA_5F002092955.1_202017- 04-17] 534 sequences; 43,569,032 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq112 87.8 2e-12 >seq112 Length=929211 Score = 87.8 bits (96), Expect = 2e-12 Identities = 165/240 (69%), Gaps = 6/240 (3%) Strand=Plus/Plus Query 6841 GATCACGTACTGCAGCTGGTCCGCTCCCTGTCCCGAATAGTCCGCTTCGCTCCCCCGATA 6900 ||| || | |||||||||||| | ||||| || | ||||| | |||| | || Sbjct 920578 GATGACCTCCTGCAGCTGGTCGACGCCCTGACCAGTGTAGTCGGTATCGCAGTCTACGTA 920637 Query 6901 CTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCG 6960 | || ||||| || | ||||||||| || || || ||||| | ||||| || || Sbjct 920638 TTTAGCGCCAAAATGGCGCCACTGGAAGCCATACACGGGGCCGAGATCGCCTTCT---CG 920694 Query 6961 A-GATGG--GAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTT 7017 | ||||| || || || ||||| |||||| | || || || | ||||||||||||| Sbjct 920695 ACGATGGTTGAGGCCGCGGTTGTCGAGAAAGGCGCGCGAGCCATTGCCGTCCCAGATCTT 920754 Query 7018 CACCCCCCGGGACGAGAGCTCCTTGGTGTTCGTGGCCCCCCTCACGAACCACAGCAGCTC 7077 || ||| | | ||||||| | ||| || | ||| | || ||||| |||||||| Sbjct 920755 GACGCCCTGCGCCGAGAGCAAGGTACTGTCTGTAGAGCCCTTGACAAACCAGAGCAGCTC 920814 Score = 87.8 bits (96), Expect = 2e-12 Identities = 165/240 (69%), Gaps = 6/240 (3%) Strand=Plus/Minus Query 34268 GAGCTGCTGTGGTTCGTGAGGGGGGCCACGAACACCAAGGAGCTCTCGTCCCGGGGGGTG 34327 |||||||| ||||| || | ||| | || ||| | ||||||| | | ||| || Sbjct 920814 GAGCTGCTCTGGTTTGTCAAGGGCTCTACAGACAGTACCTTGCTCTCGGCGCAGGGCGTC 920755 Query 34328 AAGATCTGGGACGCTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGGTTC--CCATC-T 34384 ||||||||||||| | || || || | |||||| ||||| || || || ||||| | Sbjct 920754 AAGATCTGGGACGGCAATGGCTCGCGCGCCTTTCTCGACAACCGCGGCCTCAACCATCGT 920695 Query 34385 CGGGAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAG 34444 || || ||||| | ||||| || || || ||||||||| | || ||||| || | Sbjct 920694 CG---AGAAGGCGATCTCGGCCCCGTGTATGGCTTCCAGTGGCGCCATTTTGGCGCTAAA 920638 Query 34445 TATCGGGGGAGCGAAGCGGACTATTCGGGACAGGGAGCGGACCAGCTGCAGTACGTGATC 34504 || | |||| | ||||| | || ||||| | |||||||||||| | || ||| Sbjct 920637 TACGTAGACTGCGATACCGACTACACTGGTCAGGGCGTCGACCAGCTGCAGGAGGTCATC 920578 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448259407848480