Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Auricularia_20auricula-judae_20[genbank_20GCA_5F002092955.1_202017- 04-17] 534 sequences; 43,569,032 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq524 127 2e-24 seq57 111 1e-19 >seq524 Length=649165 Score = 127 bits (140), Expect = 2e-24 Identities = 157/211 (74%), Gaps = 3/211 (1%) Strand=Plus/Plus Query 39076 ACCAA-ATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 ||||| ||| ||||||||||| || || ||||| || |||| ||| || || |||| || Sbjct 612706 ACCAAGATGCAGCGTGCTCTCCTTCTGGATATTGTAGTCGGAAAGCGTGCGCCCGTCCTC 612765 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 || || ||||| || || ||||||||||||||||||| || | | || |||||| Sbjct 612766 GAGTTGCTTGCCGGCGAAAATAAGACGCTGCTGGTCGGGCGGGATTCCTTCCTTGTCCTG 612825 Query 39195 GATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTT 39253 ||||||| |||| ||| | | | ||||||| ||||| || || | |||||| | | Sbjct 612826 GATTTTCGCCTTGA-CGTTGTCGATCGTATCGGAGGACTCGACCTCGAGCGTGATTGTCT 612884 Query 39254 TTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | || || ||||| || || || |||||||| Sbjct 612885 TGCCAGTAAGCGTCTTGACGAAAATTTGCAT 612915 Score = 107 bits (118), Expect = 2e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 39081 ATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTG 39140 ||| ||||||||||| || || || || ||||| | || || || | || || ||||| Sbjct 613504 ATGGAGCGTGCTCTCCTTCTGGATGTTGTAATCAGAGAGCGTGCGGCCATCCTCGAGCTG 613563 Query 39141 TTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTT 39200 ||||| ||||| || || ||||||||||||| || | || ||| |||||| ||| || Sbjct 613564 CTTGCCAGCAAAGATCAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGGATCTT 613623 Query 39201 CTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGT 39260 |||| | | | || ||||| ||||| || || | |||||| | || || || Sbjct 613624 GGCCTTGACATTATCGATGGTGTCGCTGGACTCGACCTCGAGCGTGATGGTCTTGCCGGT 613683 Query 39261 CAGCGTTTTAACAAAGATTTGCAT 39284 || || || |||||||| ||||| Sbjct 613684 GAGGGTCTTGACAAAGATCTGCAT 613707 Score = 105 bits (116), Expect = 6e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 39082 TGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGT 39141 || ||||||||||| || || || || || |||| || || || |||| || ||||| Sbjct 613220 TGGAGCGTGCTCTCCTTCTGAATGTTGTAGTCGGAGAGAGTGCGACCGTCCTCTAGCTGC 613279 Query 39142 TTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTC 39201 ||||| || || || |||||||||||||||| || | || ||| |||||| ||| || Sbjct 613280 TTGCCGGCGAAGATCAGACGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGGATCTTG 613339 Query 39202 TGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTC 39261 |||| | | | || || || ||| || |||| ||||| | || |||||| Sbjct 613340 GCCTTGACATTATCGATAGTGTCACTGCTCTCGACCTCCAGGGTGATCGTCTTGCCCGTC 613399 Query 39262 AGCGTTTTAACAAAGATTTGCAT 39284 ||||| || || ||||| ||||| Sbjct 613400 AGCGTCTTCACGAAGATCTGCAT 613422 Score = 95.1 bits (104), Expect = 1e-14 Identities = 145/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 39082 TGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGT 39141 || |||||| ||| || || ||||| ||||||| || || || |||| || || || Sbjct 612941 TGCAGCGTGGACTCCTTCTGGATATTGTAATCGGACAGCGTCCGACCGTCCTCGAGTTGC 613000 Query 39142 TTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTC 39201 ||||| || || || | ||||||||||||| || | | ||| || ||| ||||||| Sbjct 613001 TTGCCGGCGAAAATCAAGCGCTGCTGGTCGGGCGGGATCCCCTCCTTATCCTGGATTTTC 613060 Query 39202 TGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGT 39260 |||| ||| | | | ||| || ||||| || |||| ||||| | || || || Sbjct 613061 GCCTTGA-CGTTGTCAATCGTGTCCGAGGACTCGACTTCCAGGGTGATGGTCTTCCCGGT 613119 Query 39261 CAGCGTTTTAACAAAGATTTGCAT 39284 || ||| || |||||||| ||||| Sbjct 613120 CAACGTCTTGACAAAGATCTGCAT 613143 >seq57 Length=599116 Score = 111 bits (122), Expect = 1e-19 Identities = 142/193 (74%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 39093 CTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAA 39152 ||| || || || || ||||| | ||| || || | || || ||||| ||||| ||||| Sbjct 467713 CTCCTTCTGGATGTTGTAATCCGAAAGAGTGCGGCCATCCTCGAGCTGCTTGCCGGCAAA 467772 Query 39153 TATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGT 39212 ||||| ||||||||||| | || | || ||| |||||| ||| ||| ||||| ||| Sbjct 467773 GATAAGGCGCTGCTGGTCAGGTGGAATGCCCTCCTTGTCCTGGATCTTCGCTTTGA-CGT 467831 Query 39213 CG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAA 39271 | | | ||| ||| |||||| || |||| |||||| | || || || || || |||| Sbjct 467832 TGTCGATCGTGTCGGACGACTCGACCTCCAGCGTGATCGTCTTGCCGGTGAGTGTCTTAA 467891 Query 39272 CAAAGATTTGCAT 39284 | || |||||||| Sbjct 467892 CGAATATTTGCAT 467904 Score = 109 bits (120), Expect = 5e-19 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 39067 AAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGT 39126 ||||| | || | ||| |||||| ||| || || || || ||||| | ||| || || Sbjct 467459 AAGCGCAGGACGAGATGGAGCGTGGACTCCTTCTGGATGTTGTAATCCGAAAGAGTGCGG 467518 Query 39127 TCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCT 39186 |||| || | ||| ||||| || || || || ||||||||||||| || | || ||| Sbjct 467519 CCGTCCTCCAACTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGAGGGATGCCCTCC 467578 Query 39187 TTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTG 39246 || ||| ||| ||| |||| | | | ||| ||| |||||| || |||| |||| Sbjct 467579 TTATCCTGGATCTTCGCCTTGACGTTATCAATCGTGTCGGACGACTCAACTTCCAACGTG 467638 Query 39247 ATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || | || || |||||||| || || ||||| ||||| Sbjct 467639 ATCGTCTTGCCAGTCAGCGTCTTGACGAAGATCTGCAT 467676 Score = 93.3 bits (102), Expect = 4e-14 Identities = 138/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 39093 CTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAA 39152 ||| || || || ||||| || | ||| || || |||| || ||||| ||||| || || Sbjct 467998 CTCCTTCTGGATGTTATAGTCCGAAAGAGTGCGACCGTCTTCGAGCTGCTTGCCGGCGAA 468057 Query 39153 TATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGT 39212 || || ||||||||||| | || | || || |||||| ||| ||| || | ||| Sbjct 468058 AATGAGGCGCTGCTGGTCTGGCGGGATGCCTTCCTTGTCCTGGATCTTCGCCTTCA-CGT 468116 Query 39213 CG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAA 39271 | | | || || |||||||| |||| |||||| | || |||||||| || || | Sbjct 468117 TGTCGATGGTGTCCGAAGACTCCACCTCCAGCGTGATGGTCTTGCCCGTCAGTGTCTTGA 468176 Query 39272 CAAAGATTTGCAT 39284 | ||||||||||| Sbjct 468177 CGAAGATTTGCAT 468189 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429542804463542