Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Auricularia_20auricula-judae_20[genbank_20GCA_5F002092955.1_202017- 04-17] 534 sequences; 43,569,032 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq57 89.7 3e-13 seq524 82.4 5e-11 >seq57 Length=599116 Score = 89.7 bits (98), Expect = 3e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || |||||||| || ||||| || || |||||||| || || || || || | Sbjct 467904 ATGCAAATATTCGTTAAGACACTCACCGGCAAGACGATCACGCTGGAGGTCGAGTCGTCC 467845 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | ||| || || ||||| || || | || || || || Sbjct 467844 GACACGATCGACAACGTCAAAGCGAAGATCCAGGACAAGGAGGGCATTCCACCTGACCAG 467785 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||||| | || ||||||||||| || || || || | |||||| | ||||||||| Sbjct 467784 CAGCGCCTTATCTTTGCCGGCAAGCAGCTCGAGGATGGCCGCACTCTTTCGGATTACAAC 467725 Query 23791 ATACAAAAAGAGTCCACATTACAT 23814 || || || ||||| ||| | ||| Sbjct 467724 ATCCAGAAGGAGTCGACACTGCAT 467701 Score = 86.0 bits (94), Expect = 4e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || || || || || || |||||||| | |||||||| || | Sbjct 467676 ATGCAGATCTTCGTCAAGACGCTGACTGGCAAGACGATCACGTTGGAAGTTGAGTCGTCC 467617 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||| | | || || || || || || || | || || || || Sbjct 467616 GACACGATTGATAACGTCAAGGCGAAGATCCAGGATAAGGAGGGCATCCCTCCCGACCAG 467557 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||||| | || || |||||||| || |||| |||| |||||| | ||||||||| Sbjct 467556 CAGCGCCTCATCTTCGCCGGCAAGCAGTTGGAGGACGGCCGCACTCTTTCGGATTACAAC 467497 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || |||||||| Sbjct 467496 ATCCAGAAGGAGTCCAC 467480 Score = 84.2 bits (92), Expect = 1e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || || ||||| || || || ||||| | || || || ||| || Sbjct 468417 ATGCAGATCTTTGTCAAGACACTCACTGGCAAGACCATCACGTTGGAGGTGGAGTCCTCG 468358 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| | || | || | | ||||| || || | ||||| || || Sbjct 468357 GACACCATCGACAATGTGAAGGCGAAGA-TCCAGGACAAGGAGGGCATCCCGCCCGACCA 468299 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 || || | || ||||||||||| || || ||||||| |||||| | || ||||| Sbjct 468298 GCAACGCCTCATTTTTGCCGGCAAGCAGCTCGAAGACGGTCGCACTCTCTCGGACTACAA 468239 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || ||||| || Sbjct 468238 CATTCAGAAGGAGTCGAC 468221 >seq524 Length=649165 Score = 82.4 bits (90), Expect = 5e-11 Identities = 136/194 (70%), Gaps = 2/194 (1%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||| || || || |||||||| || || || ||||| ||||| || || |||| Sbjct 613708 AATGCAGATCTTTGTCAAGACCCTCACCGGCAAGACCATCACGCTCGAGGTCGAGTCCAG 613649 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 ||||| | || ||| | || | || | | ||||| || || | ||||| || | Sbjct 613648 CGACACCATCGATAATGTCAAGGCCAAGA-TCCAGGACAAGGAGGGCATCCCGCCCGACC 613590 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 | ||||| | || ||||| ||||| || || || || | ||||| | ||||||| Sbjct 613589 AGCAGCGCCTGATCTTTGCTGGCAAGCAGCTCGAGGATGGCCGCACGCTCTCTGATTACA 613530 Query 23789 ACATACAAAAAGAG 23802 |||| || || ||| Sbjct 613529 ACATCCAGAAGGAG 613516 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338007400191272