Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Auricularia_20auricula-judae_20[genbank_20GCA_5F002092955.1_202017- 04-17] 534 sequences; 43,569,032 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq57 168 2e-36 seq524 145 2e-29 seq190 84.2 5e-11 >seq57 Length=599116 Score = 168 bits (186), Expect = 2e-36 Identities = 161/206 (78%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || || ||||| || || |||||||| || ||||| || || ||| Sbjct 467901 CAAATATTCGTTAAGACACTCACCGGCAAGACGATCACGCTGGAGGTCGAGTCGTCCGAC 467842 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| ||||||||| ||||| |||||||| || || || || || |||||||| Sbjct 467841 ACGATCGACAACGTCAAAGCGAAGATCCAGGACAAGGAGGGCATTCCACCTGACCAGCAG 467782 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || |||||||| ||||| || |||||||| ||||| | |||||| | ||||| ||| || Sbjct 467781 CGCCTTATCTTTGCCGGCAAGCAGCTCGAGGATGGCCGCACTCTTTCGGATTACAACATC 467722 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || ||||||||||| || Sbjct 467721 CAGAAGGAGTCGACACTGCATCTCGT 467696 Score = 154 bits (170), Expect = 4e-32 Identities = 157/205 (77%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || || || || || || || ||||| || |||||||| || ||| Sbjct 468186 CAAATCTTCGTCAAGACACTGACGGGCAAGACCATCACGCTGGAGGTGGAGTCTTCGGAC 468127 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| ||||| || ||||| |||||||| ||||| ||||| || |||||||| Sbjct 468126 ACCATCGACAACGTGAAGGCGAAGATCCAGGACAAGGAAGGCATCCCGCCAGACCAGCAG 468067 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || || |||||||| || ||||||||||| || | |||||| | || |||||| || Sbjct 468066 CGCCTCATTTTCGCCGGCAAGCAGCTCGAAGACGGTCGCACTCTTTCGGACTATAACATC 468007 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || || || || || || || |||| Sbjct 468006 CAGAAGGAGTCGACTCTCCACCTTG 467982 Score = 129 bits (142), Expect = 1e-24 Identities = 152/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || || || ||||| || || || ||||| | |||||||| ||| ||| Sbjct 468414 CAGATCTTTGTCAAGACACTCACTGGCAAGACCATCACGTTGGAGGTGGAGTCCTCGGAC 468355 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || || || ||||| |||||||| || || ||||| || ||||||||| Sbjct 468354 ACCATCGACAATGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCGCCCGACCAGCAA 468295 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || || || ||||| || ||||||||||| || | ||||| | || || ||| | Sbjct 468294 CGCCTCATTTTTGCCGGCAAGCAGCTCGAAGACGGTCGCACTCTCTCGGACTACAACATT 468235 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || || || ||||| Sbjct 468234 CAGAAGGAGTCGACTCTCCACCTTGT 468209 Score = 123 bits (136), Expect = 6e-23 Identities = 151/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || || || || || |||||||| | || || || || ||| Sbjct 467673 CAGATCTTCGTCAAGACGCTGACTGGCAAGACGATCACGTTGGAAGTTGAGTCGTCCGAC 467614 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || |||||||| ||||| ||||| || || || |||||||| |||||||| Sbjct 467613 ACGATTGATAACGTCAAGGCGAAGATCCAGGATAAGGAGGGCATCCCTCCCGACCAGCAG 467554 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||||||||| || ||| | || || || | |||||| | ||||| ||| || Sbjct 467553 CGCCTCATCTTCGCCGGCAAGCAGTTGGAGGACGGCCGCACTCTTTCGGATTACAACATC 467494 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || || ||||| || Sbjct 467493 CAGAAGGAGTCCACGCTCCATCTCGT 467468 >seq524 Length=649165 Score = 145 bits (160), Expect = 2e-29 Identities = 155/205 (76%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| || || || || || || || ||||| |||||||| || ||| || Sbjct 612912 CAAATTTTCGTCAAGACGCTTACTGGCAAGACAATCACGCTCGAGGTCGAGTCCTCCGAT 612853 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| |||||||| || || |||||||| ||||||||||| || |||||||| Sbjct 612852 ACGATCGACAACGTCAAGGCGAAAATCCAGGACAAGGAAGGAATCCCGCCCGACCAGCAG 612793 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || ||||| |||||||| || || ||||| || || | || ||| |||| || || || Sbjct 612792 CGTCTTATTTTCGCCGGCAAGCAACTCGAGGACGGGCGCACGCTTTCCGACTACAATATC 612733 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || || || || |||||||||| Sbjct 612732 CAGAAGGAGAGCACGCTGCATCTTG 612708 Score = 132 bits (146), Expect = 1e-25 Identities = 142/188 (76%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| || || || || || ||||||||||| ||||| || ||| ||| Sbjct 613419 CAGATCTTCGTGAAGACGCTGACGGGCAAGACGATCACCCTGGAGGTCGAGAGCAGTGAC 613360 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| || ||||| ||||| |||||||| || || ||||| || |||||||| Sbjct 613359 ACTATCGATAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCGCCCGACCAGCAG 613300 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||||||||| || ||||| || || || | ||||| |||| || ||| | Sbjct 613299 CGTCTGATCTTCGCCGGCAAGCAGCTAGAGGACGGTCGCACTCTCTCCGACTACAACATT 613240 Query 178104 CAAAAAGA 178111 || || || Sbjct 613239 CAGAAGGA 613232 Score = 118 bits (130), Expect = 3e-21 Identities = 139/188 (74%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || || || ||||| || || || ||||| |||||||| || | ||| Sbjct 613704 CAGATCTTTGTCAAGACCCTCACCGGCAAGACCATCACGCTCGAGGTCGAGTCCAGCGAC 613645 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || ||||| ||||| |||||||| || || ||||| || |||||||| Sbjct 613644 ACCATCGATAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCGCCCGACCAGCAG 613585 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| || || || |||||||| ||||| | || || | ||||| ||| || Sbjct 613584 CGCCTGATCTTTGCTGGCAAGCAGCTCGAGGATGGCCGCACGCTCTCTGATTACAACATC 613525 Query 178104 CAAAAAGA 178111 || || || Sbjct 613524 CAGAAGGA 613517 >seq190 Length=372578 Score = 84.2 bits (92), Expect = 5e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 178026 ATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACT 178085 ||||| || |||||||| || || ||||||||||| || |||||||| || || | ||| Sbjct 156867 ATCCCGCCTGACCAGCAGCGCCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACT 156926 Query 178086 CTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGT 178129 || | || || ||| |||| ||||| || || |||||||| || Sbjct 156927 CTCTCGGACTACAACATCCAGAAAGAGTCGACTCTGCATCTGGT 156970 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203722964221596