Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Auricularia_20auricula-judae_20[genbank_20GCA_5F002092955.1_202017- 04-17] 534 sequences; 43,569,032 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq524 174 1e-38 seq57 163 3e-35 seq190 116 3e-21 seq379 104 2e-17 >seq524 Length=649165 Score = 174 bits (192), Expect = 1e-38 Identities = 165/209 (79%), Gaps = 4/209 (2%) Strand=Plus/Plus Query 41657 AGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGC 41716 || || ||||||||||||||||||||||| ||||||||||| ||||| |||| || ||| Sbjct 613217 AGGTGGAGCGTGCTCTCCTTCTGAATGTTGTAGTCGGAGAGAGTGCGACCGTCCTCTAGC 613276 Query 41717 TGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATT 41776 |||||||||||||| ||||| ||||| ||||| | || | || |||||||||| ||| Sbjct 613277 TGCTTGCCGGCGAAGATCAGACGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGGATC 613336 Query 41777 TTTTGCTT--CAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTAC 41834 || ||| || || | |||||| || ||| ||||||| || ||||| || | Sbjct 613337 TTGGCCTTGACATTATCG--ATAGTGTCACTGCTCTCGACCTCCAGGGTGATCGTCTTGC 613394 Query 41835 CCGTCAGCGTCTTTACGAAAATCTGCATG 41863 ||||||||||||| ||||| ||||||||| Sbjct 613395 CCGTCAGCGTCTTCACGAAGATCTGCATG 613423 Score = 156 bits (172), Expect = 4e-33 Identities = 163/209 (78%), Gaps = 4/209 (2%) Strand=Plus/Plus Query 41657 AGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGC 41716 ||||||||||||||||||||||| || || |||||||| || |||||| |||| ||||| Sbjct 612710 AGATGCAGCGTGCTCTCCTTCTGGATATTGTAGTCGGAAAGCGTGCGCCCGTCCTCGAGT 612769 Query 41717 TGCTTGCCGGCGAATATCAGGCGCTGTTGGTC-CGCGGGAACGCTCTCCTTGTCCATGAT 41775 |||||||||||||| || || ||||| ||||| |||||| || ||||||||| || Sbjct 612770 TGCTTGCCGGCGAAAATAAGACGCTGCTGGTCGGGCGGGATTCCT-TCCTTGTCC-TGGA 612827 Query 41776 TTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTAC 41834 |||| || | ||| | | | || ||| ||||| ||||| | ||| || || || | Sbjct 612828 TTTTCGCCTTGACGTTGTCGATCGTATCGGAGGACTCGACCTCGAGCGTGATTGTCTTGC 612887 Query 41835 CCGTCAGCGTCTTTACGAAAATCTGCATG 41863 | || |||||||| |||||||| |||||| Sbjct 612888 CAGTAAGCGTCTTGACGAAAATTTGCATG 612916 Score = 147 bits (162), Expect = 2e-30 Identities = 164/216 (76%), Gaps = 11/216 (5%) Strand=Plus/Plus Query 41653 CACC-AGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGT 41711 |||| ||||| ||||||||||||||||| ||||| || || ||||| ||||| | || | Sbjct 613497 CACCGAGATGGAGCGTGCTCTCCTTCTGGATGTTGTAATCAGAGAGCGTGCGGCCATCCT 613556 Query 41712 CGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCA 41771 ||||||||||||| || || ||||||||||| ||||| | || | || |||||||||| Sbjct 613557 CGAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCT 613616 Query 41772 TGATTTT----TTG-CTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTAT 41826 ||| || ||| | | | ||| | |||||||| ||||| ||||| | ||| || Sbjct 613617 GGATCTTGGCCTTGACATTATCGATG-----GTGTCGCTGGACTCGACCTCGAGCGTGAT 613671 Query 41827 CGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || || || || ||||| || || |||||||| Sbjct 613672 GGTCTTGCCGGTGAGGGTCTTGACAAAGATCTGCAT 613707 Score = 127 bits (140), Expect = 2e-24 Identities = 170/231 (74%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || || || | || || ||||||||| ||||||||| || || || ||||| Sbjct 612916 GCCACCACGCAGGCGCAGAACAAGGTGCAGCGTGGACTCCTTCTGGATATTGTAATCGGA 612975 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTC-CGCGG 41753 || || || |||| ||||| |||||||||||||| |||| |||||| ||||| |||| Sbjct 612976 CAGCGTCCGACCGTCCTCGAGTTGCTTGCCGGCGAAAATCAAGCGCTGCTGGTCGGGCGG 613035 Query 41754 GAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCC 41812 || | | |||||| ||| || |||| || | ||| | | | ||||| ||||| Sbjct 613036 GATC-CCCTCCTTATCC-TGGATTTTCGCCTTGACGTTGTCAATCGTGTCCGAGGACTCG 613093 Query 41813 ACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 || |||| || || || || || |||| |||||| || || ||||||||| Sbjct 613094 ACTTCCAGGGTGATGGTCTTCCCGGTCAACGTCTTGACAAAGATCTGCATG 613144 >seq57 Length=599116 Score = 163 bits (180), Expect = 3e-35 Identities = 175/229 (76%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||||||||| ||||| | || |||||||| || ||||||||| ||||| || || || Sbjct 467677 GCCGCCGCGCAGACGAAGGACGAGATGCAGTGTCGACTCCTTCTGGATGTTGTAATCCGA 467736 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 || ||||| | || ||||||||||||||||| || || |||||||| ||||| | || Sbjct 467737 AAGAGTGCGGCCATCCTCGAGCTGCTTGCCGGCAAAGATAAGGCGCTGCTGGTCAGGTGG 467796 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 || || |||||||||| || | || |||| ||| | | | |||||| |||||| | Sbjct 467797 AATGCCCTCCTTGTCC-TGGATCTTCGCTTTGACGTTGTCGATCGTGTCGGACGACTCGA 467855 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||||| ||| ||||| || || || || ||||| ||||| || ||||| Sbjct 467856 CCTCCAGCGTGATCGTCTTGCCGGTGAGTGTCTTAACGAATATTTGCAT 467904 Score = 149 bits (164), Expect = 6e-31 Identities = 179/240 (75%), Gaps = 9/240 (4%) Strand=Plus/Plus Query 41629 ATCACCG-CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTAT 41687 ||||| | ||||| || | || | || ||||| |||||| ||||||||| ||||| | Sbjct 467442 ATCACAGACCGCCACGCAAGCGCAGGACGAGATGGAGCGTGGACTCCTTCTGGATGTTGT 467501 Query 41688 AGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGT 41747 | || || || ||||| |||| || | ||||||||||||||| || |||||||| |||| Sbjct 467502 AATCCGAAAGAGTGCGGCCGTCCTCCAACTGCTTGCCGGCGAAGATGAGGCGCTGCTGGT 467561 Query 41748 CCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACA-CA---GTGTCG 41803 | | || | || |||||| ||| ||| || ||| |||| | || |||||| Sbjct 467562 CGGGAGGGATGCCCTCCTTATCCTGGATCTTCGCCTT----GACGTTATCAATCGTGTCG 467617 Query 41804 CTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 |||||| || |||| ||| ||||| || || ||||||||||| ||||| ||||||||| Sbjct 467618 GACGACTCAACTTCCAACGTGATCGTCTTGCCAGTCAGCGTCTTGACGAAGATCTGCATG 467677 Score = 149 bits (164), Expect = 6e-31 Identities = 151/194 (78%), Gaps = 2/194 (1%) Strand=Plus/Plus Query 41671 CTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 41730 ||||||||| ||||||||||| || || ||||| |||| |||||||||||||||||||| Sbjct 467998 CTCCTTCTGGATGTTATAGTCCGAAAGAGTGCGACCGTCTTCGAGCTGCTTGCCGGCGAA 468057 Query 41731 TATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGA 41790 || |||||||| ||||| | || | || ||||||||| ||| || |||| ||| Sbjct 468058 AATGAGGCGCTGCTGGTCTGGCGGGATGCCTTCCTTGTCCTGGATCTTCGCCTTC-ACGT 468116 Query 41791 CGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTA 41849 | | | ||||| ||||||||||||| ||| || || || |||||||| ||||| | Sbjct 468117 TGTCGATGGTGTCCGAAGACTCCACCTCCAGCGTGATGGTCTTGCCCGTCAGTGTCTTGA 468176 Query 41850 CGAAAATCTGCATG 41863 |||| || |||||| Sbjct 468177 CGAAGATTTGCATG 468190 Score = 147 bits (162), Expect = 2e-30 Identities = 172/230 (75%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 |||||| || ||||| | || || || || || ||||||||||||||| ||||| || Sbjct 468190 GCCGCCACGGAGACGAAGGACAAGGTGGAGAGTCGACTCCTTCTGAATGTTGTAGTCCGA 468249 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 ||| ||||| |||| ||||||||||||||||| || || ||||| || ||||| | || Sbjct 468250 GAGAGTGCGACCGTCTTCGAGCTGCTTGCCGGCAAAAATGAGGCGTTGCTGGTCGGGCGG 468309 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 | || |||||||||| ||| || |||| || | | | ||||| ||||||| Sbjct 468310 GATGCCCTCCTTGTCCTGGATCTTCGCCTTC-ACATTGTCGATGGTGTCCGAGGACTCCA 468368 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 |||||| ||| || || || || || || ||||| || || ||||||||| Sbjct 468369 CCTCCAACGTGATGGTCTTGCCAGTGAGTGTCTTGACAAAGATCTGCATG 468418 Score = 122 bits (134), Expect = 8e-23 Identities = 100/122 (82%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||||||||| ||||| | || || || ||||||||||||||||| ||||||||||| || Sbjct 468418 GCCGCCGCGCAGACGGAGGACGAGGTGGAGCGTGCTCTCCTTCTGGATGTTATAGTCCGA 468477 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 |||||||| | || |||||||||||||| ||||| || || ||||| || |||| || Sbjct 468478 CAGGGTGCGACCATCCTCGAGCTGCTTGCCCGCGAAGATAAGACGCTGCTGATCCGGAGG 468537 Query 41755 AA 41756 || Sbjct 468538 AA 468539 >seq190 Length=372578 Score = 116 bits (128), Expect = 3e-21 Identities = 99/121 (82%), Gaps = 1/121 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | ||||||||||| || ||| ||||| ||||| ||||| ||| Sbjct 156988 CCACCACGGAGACGAAGGACCAGATGCAGAGTCGACTCTTTCTGGATGTTGTAGTCCGAG 156929 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTC-CGCGGG 41754 || ||||| |||| |||||||||||||||||||| ||||||||||| ||||| ||||| Sbjct 156928 AGAGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGCGGG 156869 Query 41755 A 41755 | Sbjct 156868 A 156868 >seq379 Length=286460 Score = 104 bits (114), Expect = 2e-17 Identities = 97/122 (80%), Gaps = 1/122 (1%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 |||||| || ||||| | || || |||||||| ||||||||| ||||| ||||| || Sbjct 273244 GCCGCCACGCAGACGGAGGACAAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGA 273185 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTC-CGCGG 41753 || || || |||| || |||||||||||||| || ||||||||||| ||||| |||| Sbjct 273184 CAGCGTCCGGCCGTCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCGGGCGG 273125 Query 41754 GA 41755 || Sbjct 273124 GA 273123 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462300914120800