Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Baeospora_20myosura_20[genbank_20GCA_5F001179705.1_202015-07-08] 182,489 sequences; 61,019,048 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq181137 93.3 5e-14 seq176134 82.4 9e-11 >seq181137 Length=58212 Score = 93.3 bits (102), Expect = 5e-14 Identities = 138/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||| || | | || || |||| || |||||||| || || || Sbjct 1878 CTCCTTCTGGATGTTGTAGTCGGATAAGGTACGGCCGTCTTCGAGCTGCTTCCCGGCAAA 1937 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || || ||||||||||| | || | | |||||||| | ||| | |||| || ||| Sbjct 1938 GATAAGACGCTGCTGGTCTGGGGGAATACCCTCCTTGT-CTTGAATCTTTGCTTTCACGT 1996 Query 43112 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 | | | || || || ||||| || | |||||||| |||||||| || ||||| | Sbjct 1997 TGTCAATGGTATCCGAAGACTCCACCTCAAGAGTGATGGTCTTGCCCGTGAGGGTCTTAA 2056 Query 43171 CAAAGATTTGCAT 43183 ||||||| ||||| Sbjct 2057 CAAAGATCTGCAT 2069 >seq176134 Length=3119 Score = 82.4 bits (90), Expect = 9e-11 Identities = 68/83 (82%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 42989 GCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGC 43048 ||||||||| ||||| ||||| |||| ||||| || |||| || |||||||| ||||| Sbjct 3119 GCTCTCCTTCTGAATGTTGTAGTCAGAAAGAGTGCGACCGTCCTCGAGCTGCTTTCCAGC 3060 Query 43049 GAATATGAGTCGCTGCTGGTCGG 43071 ||| || | ||||||||||||| Sbjct 3059 GAAGATCAAACGCTGCTGGTCGG 3037 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570513219724920