Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Baeospora_20myosura_20[genbank_20GCA_5F001179705.1_202015-07-08] 182,489 sequences; 61,019,048 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq181137 104 2e-17 seq176134 86.0 5e-12 >seq181137 Length=58212 Score = 104 bits (114), Expect = 2e-17 Identities = 143/195 (73%), Gaps = 4/195 (2%) Strand=Plus/Plus Query 45145 CTCCTTCTGAATGTTGTAGTCGT-TCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGA 45203 ||||||||| |||||||||||| | || | || |||| || || || || ||||| | Sbjct 1878 CTCCTTCTGGATGTTGTAGTCGGATAAGGTA-CGGCCGTCTTCGAGCTGCTTCCCGGCAA 1936 Query 45204 ATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCG 45263 | || | ||||| ||||| || || | |||||||||||| ||| ||| |||| || Sbjct 1937 AGATAAGACGCTGCTGGTCTGGGGGAATACCCTCCTTGTCTTGAATCTTT-GCTTTCACG 1995 Query 45264 CCGCCAC-GCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTC 45322 | || | | ||| | ||||||||| | || || ||||||||||| || ||||| Sbjct 1996 TTGTCAATGGTATCCGAAGACTCCACCTCAAGAGTGATGGTCTTGCCCGTGAGGGTCTTA 2055 Query 45323 ACAAAGATTTGCATG 45337 |||||||| |||||| Sbjct 2056 ACAAAGATCTGCATG 2070 Score = 82.4 bits (90), Expect = 6e-11 Identities = 143/208 (69%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 45129 CCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCA 45188 |||| || || || ||||||||| || || || || || ||| | || |||| Sbjct 1406 CCAAATGAAGAGTCGACTCCTTCTGGATATTATAATCCGAAAGGGTACGACCATCCTCCA 1465 Query 45189 GTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAA 45248 || || |||||||| || | || || || || ||||| | || ||||||||| | Sbjct 1466 ACTGCTTCCCGGCGAAGATGAGACGTTGCTGATCAGGAGGAATGCCTTCCTTGTCCTGGA 1525 Query 45249 TTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGC 45308 | || ||| || | | | ||||| | ||||||||||| || |||||||||| Sbjct 1526 TCTTCGCCTTCACGTTGTCGATGGTGTCCGAAGACTCCACCTCCAGCGTGATCGTCTTGC 1585 Query 45309 CCGTCAGAGTCTTCACAAAGATTTGCAT 45336 |||| || ||||| || ||||| ||||| Sbjct 1586 CCGTGAGGGTCTTGACGAAGATCTGCAT 1613 >seq176134 Length=3119 Score = 86.0 bits (94), Expect = 5e-12 Identities = 71/87 (82%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 45142 GCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGC 45201 |||||||||||||||||||||||| || |||| |||| || || || ||||| || Sbjct 3119 GCTCTCCTTCTGAATGTTGTAGTCAGAAAGAGTGCGACCGTCCTCGAGCTGCTTTCCAGC 3060 Query 45202 GAATATCAACCGCTGTTGGTCGGGAGG 45228 ||| ||||| ||||| ||||||||||| Sbjct 3059 GAAGATCAAACGCTGCTGGTCGGGAGG 3033 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 394196519297269