Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Baeospora_20myosura_20[genbank_20GCA_5F001179705.1_202015-07-08] 182,489 sequences; 61,019,048 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq174905 203 4e-47 seq178594 102 1e-16 seq175565 82.4 1e-10 >seq174905 Length=21728 Score = 203 bits (224), Expect = 4e-47 Identities = 382/558 (68%), Gaps = 8/558 (1%) Strand=Plus/Plus Query 33582 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGT 33641 || ||||||||| |||| ||||| |||| || || | ||| || ||||| || | Sbjct 14670 CAGGCGAAATCGGTATGCATTCCCTCATCTCGGCTGATGAGTTCATTTGAAAATGTTAAG 14729 Query 33642 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAG 33701 || ||||| || || ||||| || | ||||||||| |||||||| || || || |||||| Sbjct 14730 CCAGGCATGAGCCCCCGCTTCTTTATCCAAAATATTGAAGCGAACGAGCCAGAGAAGAAG 14789 Query 33702 ATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCT---GTCATGT 33758 || ||||| || || ||||| || | || | ||| || | || || |||| | Sbjct 14790 ATGCCTTCGACCGCGGCAAAAGCGACTAGACGCTCAGCAAATGTGGAGCCTTCGTCAGAT 14849 Query 33759 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTA 33818 |||||||| | ||||| || ||||| || | ||||| || || |||||||| | | Sbjct 14850 ATCCACTTGAGGGCCCATTCAGCCTTGCGCTTGATGCAAGGAATTGTCTCTATGGCGTCA 14909 Query 33819 AAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATT 33878 || ||||| | | ||| ||| || || | || || ||||| | ||| ||| | Sbjct 14910 AATAGATACTCTCTTTGATTTGGGTCCTTGATGTAGGTGTCGATGAGAAGGGAATAGGTC 14969 Query 33879 TCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATC 33938 || | || | ||| || || || ||||| || |||||||| | || |||| | Sbjct 14970 TCTGCGTGGACGTTCTCCATCATAATTTGAAACCCATAGAAACAGCGTGCTTCGGCGACT 15029 Query 33939 TGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGCA 33998 || ||||| | | || |||| | | ||||||||| || || || ||| || ||| Sbjct 15030 TGTACTTCGTTGGAGAAACGTTGAACAAGATTTTCATTGACGATACCGTCAGAAGCGGCA 15089 Query 33999 AAAAACGCCAATACATGTTTTATAAAATATTTTTCGTC-TGGTGTTAGTTTATT---CCA 34054 || || || | | ||| ||||||| ||||| | || |||| || || ||| Sbjct 15090 AAGAAGGCAAGGATGTGTGAAATAAAATGGCGTTCGTTGTCGT-TTAGATTGTTGTTCCA 15148 Query 34055 ATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTT 34114 || | | || | ||||| ||||| |||||| | ||||||||||||||||| ||||| Sbjct 15149 GTCCATTAGGTCGTGAGATAAATCCAGTTCTTCAGCAGTCCAAAATGATGCCTCCGCCTT 15208 Query 34115 TTTATACATATTCCAGAT 34132 || ||||| | |||||| Sbjct 15209 CTTGTACATCTGCCAGAT 15226 >seq178594 Length=29560 Score = 102 bits (112), Expect = 1e-16 Identities = 163/234 (70%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 63279 AAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCT 63338 || |||||||||||||| || || ||| | ||| | | | | ||||| || || Sbjct 5390 AAAAGATCAGGAATCCACAGTGCGTAAAACAAATCACGAGCGCGAGACTCCTCCTTGCCG 5449 Query 63339 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATG 63398 ||||| | |||||||||||| | | || ||| | |||||| || || | ||| ||| Sbjct 5450 TGGTTCTTCCTCAGATCGAGGAACTCGAAAACATCCGCATGCCATGGCTCGAGGTAGATG 5509 Query 63399 GCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 63458 || | | |||| || || ||||| || || ||||| | || | ||||||| || ||| Sbjct 5510 GCGAAAGCTCCGGGACGCTTGTTGCCACCTTGATCAACATAACGAGCGGTGGCATCATAG 5569 Query 63459 ACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAG 63512 ||| | ||| |||| || ||||| || ||||||||| |||| || ||| Sbjct 5570 GCTCGGAGCATAGGAACGATTCCGTTGGAATAACCATTGGTCCCGGCAATGTAG 5623 >seq175565 Length=26152 Score = 82.4 bits (90), Expect = 1e-10 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 33573 AACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAA 33632 |||| | ||| ||||| || ||| | || |||||||| || || | ||||| ||| Sbjct 8115 AACACGAGACAGGCGAAGTCAGTGTGTATCCCTTCGTCTCTGCTGATAAGCTCGTTGGAA 8174 Query 33633 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCG 33692 |||||||| ||||||| ||| | ||| || |||||| ||||||| || || || | Sbjct 8175 AACGTGAGGCCGGGCAAAAGGTTCCTCTTCTTGAGCCAATATATGGAGGCAAACGAGCTC 8234 Query 33693 GAAAAGAAGATTCCTTCTAC 33712 || ||| ||||||||| || Sbjct 8235 GAGAAGTGGATTCCTTCGAC 8254 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628380915199920