Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Baeospora_20myosura_20[genbank_20GCA_5F001179705.1_202015-07-08] 182,489 sequences; 61,019,048 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq174905 203 4e-47 seq178594 107 3e-18 seq175565 91.5 2e-13 >seq174905 Length=21728 Score = 203 bits (224), Expect = 4e-47 Identities = 382/558 (68%), Gaps = 8/558 (1%) Strand=Plus/Plus Query 36158 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 36217 || ||||||||| || | ||||| |||| || || | ||| || ||||| || | Sbjct 14670 CAGGCGAAATCGGTATGCATTCCCTCATCTCGGCTGATGAGTTCATTTGAAAATGTTAAG 14729 Query 36218 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAA 36277 || ||||| || || ||||| || | ||||||||| || || || || ||||| ||||| Sbjct 14730 CCAGGCATGAGCCCCCGCTTCTTTATCCAAAATATTGAAGCGAACGAGCCAGAGAAGAAG 14789 Query 36278 ATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACT---GTCATGT 36334 || ||||| || || ||||| || | || | ||| || | || | |||| | Sbjct 14790 ATGCCTTCGACCGCGGCAAAAGCGACTAGACGCTCAGCAAATGTGGAGCCTTCGTCAGAT 14849 Query 36335 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTA 36394 |||||||| | ||||| || ||||| || | ||||| ||||||||||| || | | Sbjct 14850 ATCCACTTGAGGGCCCATTCAGCCTTGCGCTTGATGCAAGGAATTGTCTCTATGGCGTCA 14909 Query 36395 AAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATT 36454 || ||||| | | ||| ||| || || | || || || || | ||| ||| | Sbjct 14910 AATAGATACTCTCTTTGATTTGGGTCCTTGATGTAGGTGTCGATGAGAAGGGAATAGGTC 14969 Query 36455 TCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATC 36514 || | || | ||| || || |||||||| || |||||||| | || |||| | Sbjct 14970 TCTGCGTGGACGTTCTCCATCATAATTTGAAACCCATAGAAACAGCGTGCTTCGGCGACT 15029 Query 36515 TGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCA 36574 |||||||| | | || |||| | | ||||||||| || || |||||| || ||| Sbjct 15030 TGTACTTCGTTGGAGAAACGTTGAACAAGATTTTCATTGACGATACCGTCAGAAGCGGCA 15089 Query 36575 AAAAACGCCAATACATGTTTTATAAAATATTTTTCGTT-TGGTGTTAG---TTTATTCCA 36630 || || || | | ||| ||||||| |||||| | || |||| || ||||| Sbjct 15090 AAGAAGGCAAGGATGTGTGAAATAAAATGGCGTTCGTTGTCGT-TTAGATTGTTGTTCCA 15148 Query 36631 ATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTT 36690 || | | || | ||||| ||||| |||||| | ||||||||||||||||| ||||| Sbjct 15149 GTCCATTAGGTCGTGAGATAAATCCAGTTCTTCAGCAGTCCAAAATGATGCCTCCGCCTT 15208 Query 36691 TTTATACATATTCCAGAT 36708 || ||||| | |||||| Sbjct 15209 CTTGTACATCTGCCAGAT 15226 Score = 149 bits (164), Expect = 8e-31 Identities = 369/558 (66%), Gaps = 8/558 (1%) Strand=Plus/Minus Query 36158 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 36217 || ||||| ||| ||| | |||||| || | ||| || | |||||||| || || | Sbjct 16861 CAGGCGAAGTCGGTGTGCATACCCTCATCGCGACTGATGAGCTCGTTGGAGAAGGTCAAG 16802 Query 36218 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAA 36277 |||||||| | |||||||| || | ||| || ||||| || || || |||||||||||| Sbjct 16801 CCGGGCATCATTCCACGCTTCTTCATCCAGAAGATGGATGCGAACGACCCAGAAAAGAAA 16742 Query 36278 ATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACT---GTCATGT 36334 || || || || || |||||||| | ||| | || || || || ||| ||| Sbjct 16741 ATCCCCTCAACGGCGGCAAAGGCGACAAGGCGTTCACCGAAAGTGGAACTCTGGTCGGAG 16682 Query 36335 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTA 36394 |||||||| | ||||| || ||||| ||| | || || || || || | ||| | Sbjct 16681 ATCCACTTGAGGGCCCAGTCAGCCTTGCGTTTGATGCAGGGAATGGTTTCAACAGCGTCG 16622 Query 36395 AAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATT 36454 || || ||| || | ||||| | || || || || | ||| || || Sbjct 16621 AACAGGAAGTCGCGTTGAGCGGGCTCTTTGATGTACGTGTCGATGAGGAGAGAGTAGGTT 16562 Query 36455 TCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATC 36514 || || || |||||||| || || || || || ||||| || | |||||||| Sbjct 16561 TCGGAGTGGATGTTTTCCATCATAATCTGGAAGCCATAGAAGCAACGAGCCTCGGCGGCT 16502 Query 36515 TGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCA 36574 |||||||| | || ||||| | |||||||| || || |||||| || || Sbjct 16501 TGTACTTCACCGGAGAAGCGTTCGAGAAGGTTTTCATTGACGATACCGTCAGACGCCGCG 16442 Query 36575 AAAAACGCCAATACATGTTTTATAAAATATTTTTCGTTTGGTGTT----AGTTTATTCCA 36630 || || || | || ||| || || | ||| ||| ||| | || ||||| Sbjct 16441 AAGAAAGCGAGAACGTGTGAAATGAAGTGGCGCTCG-TTGTCGTTCAGGCGGTTGTTCCA 16383 Query 36631 ATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTT 36690 |||| | ||| || || | ||||| ||||| ||||||| || || ||||| || || Sbjct 16382 GTCATGAAGATCCTTCGAGAGATCCATCTCTTCAGCTGTCCAGAACGACGCCTCCGCTTT 16323 Query 36691 TTTATACATATTCCAGAT 36708 || ||||| | |||||| Sbjct 16322 CTTGTACATCTGCCAGAT 16305 >seq178594 Length=29560 Score = 107 bits (118), Expect = 3e-18 Identities = 164/234 (70%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 66072 AAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCTATGTTCCTCGTTTCCT 66131 || |||||||||||||| || || ||| ||||| | | | | ||||| || || Sbjct 5390 AAAAGATCAGGAATCCACAGTGCGTAAAACAAATCACGAGCGCGAGACTCCTCCTTGCCG 5449 Query 66132 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCACGGTTCCAAGTATATG 66191 ||||| | |||||||||||| | | || ||| |||||| || || | ||| ||| Sbjct 5450 TGGTTCTTCCTCAGATCGAGGAACTCGAAAACATCCGCATGCCATGGCTCGAGGTAGATG 5509 Query 66192 GCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 66251 || | | |||| || || ||||| || || ||||| | || | ||||||| || ||| Sbjct 5510 GCGAAAGCTCCGGGACGCTTGTTGCCACCTTGATCAACATAACGAGCGGTGGCATCATAG 5569 Query 66252 ACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAG 66305 ||| | ||| |||| || || ||||| |||||||||||||| || ||| Sbjct 5570 GCTCGGAGCATAGGAACGATTCCGTTGGAATAACCATTGGTCCCGGCAATGTAG 5623 >seq175565 Length=26152 Score = 91.5 bits (100), Expect = 2e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 36149 AACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAA 36208 |||| | ||| ||||| || ||||| || |||||||| || || | ||||||||| Sbjct 8115 AACACGAGACAGGCGAAGTCAGTGTGTATCCCTTCGTCTCTGCTGATAAGCTCGTTGGAA 8174 Query 36209 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCA 36268 |||||||| ||||||| ||| | ||| || |||||| ||||||| ||||| || | Sbjct 8175 AACGTGAGGCCGGGCAAAAGGTTCCTCTTCTTGAGCCAATATATGGAGGCAAACGAGCTC 8234 Query 36269 GAAAAGAAAATTCCTTCTAC 36288 || ||| |||||||| || Sbjct 8235 GAGAAGTGGATTCCTTCGAC 8254 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 656671433798760