Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Baeospora_20myosura_20[genbank_20GCA_5F001179705.1_202015-07-08] 182,489 sequences; 61,019,048 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq174905 159 3e-34 >seq174905 Length=21728 Score = 159 bits (176), Expect = 3e-34 Identities = 356/528 (67%), Gaps = 11/528 (2%) Strand=Plus/Plus Query 13872 CACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAAT 13931 || || ||||| ||| | |||||||||| || || ||||| |||||||||||||| Sbjct 14670 CAGGCGAAATCGGTATGCATTCCCTCATCTCGGCTGATGAGTTCATTTGAAAATGTTAAG 14729 Query 13932 CCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAAT 13991 || ||||| | || || || |||| ||||||||||| ||| || || || || ||||| Sbjct 14730 CCAGGCATGAGCCCCCGCTTCTTTATCCAAAATATTGAAGCGAACGAGCCAGAGAAGAAG 14789 Query 13992 ATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGAT 14051 || || || || || ||||| || | || || || |||| | | || || ||| Sbjct 14790 ATGCCTTCGACCGCGGCAAAAGCGACTAGACGCTCAGCAAATGTGGAGCCTTCGTCAGAT 14849 Query 14052 ATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTA 14111 ||||| || |||||||||| || || || || ||||| || || || | | Sbjct 14850 ATCCACTTGAGGGCCCATTCAGCCTTGCGCTTGATGCAAGGAATTGTCTCTATGGCGTCA 14909 Query 14112 AATAAATATTC-CTTCTCTTT-AGTACTTGAAATGTATGTATCAATAAGTAAGCTATACA 14169 |||| ||| || ||| ||| || |||| ||||| || || || || | | ||| Sbjct 14910 AATAGATACTCTCTTTGATTTGGGTCCTTG--ATGTAGGTGTCGATGAGAAGGGAATAGG 14967 Query 14170 TTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTC--CGA 14227 | || | ||| | ||| ||||| || ||||| ||||| || || | ||||| ||| Sbjct 14968 TCTCTGCGTGGACGTTCTCCATCATAATTTGAAACCCATAGAAACAGCGTGCTTCGGCGA 15027 Query 14228 CCATTGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGC 14287 | ||||||||| | | || | || | | ||||||||| || ||||| ||| ||| Sbjct 15028 C--TTGTACTTCGTTGGAGAAACGTTGAACAAGATTTTCATTGACGATACCGTCAGAAGC 15085 Query 14288 TGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAG---TTTTTT 14344 ||||| || || | |||| | |||||| | | || | | ||| || || || Sbjct 15086 GGCAAAGAAGGCAAGGATGTGTGAAATAAAATGGCGTTCGTTGTCGTTTAGATTGTTGTT 15145 Query 14345 CCAATCGGATAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAA 14392 ||| || || || | ||| | ||| | ||| ||| | |||||||| Sbjct 15146 CCAGTCCATTAGGTCGTGAGATAAATCCAGTTCTTCAGCAGTCCAAAA 15193 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478633686462600