Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Baeospora_20myosura_20[genbank_20GCA_5F001179705.1_202015-07-08] 182,489 sequences; 61,019,048 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq174905 203 4e-47 seq178594 111 2e-19 >seq174905 Length=21728 Score = 203 bits (224), Expect = 4e-47 Identities = 381/557 (68%), Gaps = 6/557 (1%) Strand=Plus/Plus Query 42065 CATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGT 42124 || ||||||||| |||| |||||||||| || || | ||| || ||||| || | Sbjct 14670 CAGGCGAAATCGGTATGCATTCCCTCATCTCGGCTGATGAGTTCATTTGAAAATGTTAAG 14729 Query 42125 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAG 42184 || ||||| || || ||||| || | ||||||||| || || || || ||||| |||||| Sbjct 14730 CCAGGCATGAGCCCCCGCTTCTTTATCCAAAATATTGAAGCGAACGAGCCAGAGAAGAAG 14789 Query 42185 ATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACT---GTCATGT 42241 || ||||| || || ||||| || | || | ||| || | || | |||| | Sbjct 14790 ATGCCTTCGACCGCGGCAAAAGCGACTAGACGCTCAGCAAATGTGGAGCCTTCGTCAGAT 14849 Query 42242 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTA 42301 |||||||| | ||||| || ||||| || | ||||| || || |||||||| | | Sbjct 14850 ATCCACTTGAGGGCCCATTCAGCCTTGCGCTTGATGCAAGGAATTGTCTCTATGGCGTCA 14909 Query 42302 AAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATT 42361 || ||||| | | ||| ||| || || | || || ||||| | ||| ||| | Sbjct 14910 AATAGATACTCTCTTTGATTTGGGTCCTTGATGTAGGTGTCGATGAGAAGGGAATAGGTC 14969 Query 42362 TCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACC 42421 |||| || | ||| || || || ||||| || |||||||| | || |||| || Sbjct 14970 TCTGCGTGGACGTTCTCCATCATAATTTGAAACCCATAGAAACAGCGTGCTTCGGCGACT 15029 Query 42422 TGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCA 42481 |||||||| | | || |||| | | | |||||| || || || |||||| || ||| Sbjct 15030 TGTACTTCGTTGGAGAAACGTTGAACAAGATTTTCATTGACGATACCGTCAGAAGCGGCA 15089 Query 42482 AAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTA-ATT--TATTCCAA 42538 || || || | | ||| ||||||| ||||| ||| ||| | ||||| Sbjct 15090 AAGAAGGCAAGGATGTGTGAAATAAAATGGCGTTCGTTGTCGTTTAGATTGTTGTTCCAG 15149 Query 42539 TCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTT 42598 || | | || | ||||| ||| | |||||| | |||||||||||||| || ||||| Sbjct 15150 TCCATTAGGTCGTGAGATAAATCCAGTTCTTCAGCAGTCCAAAATGATGCCTCCGCCTTC 15209 Query 42599 TTATACATATTCCAGAT 42615 || ||||| | |||||| Sbjct 15210 TTGTACATCTGCCAGAT 15226 Score = 134 bits (148), Expect = 2e-26 Identities = 366/558 (66%), Gaps = 8/558 (1%) Strand=Plus/Minus Query 42065 CATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGT 42124 || ||||| ||| ||||| ||||||||| | ||| || | |||||||| || || | Sbjct 16861 CAGGCGAAGTCGGTGTGCATACCCTCATCGCGACTGATGAGCTCGTTGGAGAAGGTCAAG 16802 Query 42125 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAG 42184 |||||||| | |||||||| || | ||| || || || || || || ||||||||||| Sbjct 16801 CCGGGCATCATTCCACGCTTCTTCATCCAGAAGATGGATGCGAACGACCCAGAAAAGAAA 16742 Query 42185 ATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACT---GTCATGT 42241 || || || || || |||||||| | ||| | || || || || ||| ||| Sbjct 16741 ATCCCCTCAACGGCGGCAAAGGCGACAAGGCGTTCACCGAAAGTGGAACTCTGGTCGGAG 16682 Query 42242 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTA 42301 |||||||| | ||||| || ||||| ||| | || || || ||||| | || | Sbjct 16681 ATCCACTTGAGGGCCCAGTCAGCCTTGCGTTTGATGCAGGGAATGGTTTCAACAGCGTCG 16622 Query 42302 AAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATT 42361 || || ||| || | ||||| | || || ||||| | ||| || || Sbjct 16621 AACAGGAAGTCGCGTTGAGCGGGCTCTTTGATGTACGTGTCGATGAGGAGAGAGTAGGTT 16562 Query 42362 TCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACC 42421 || || || |||||||| || ||||| || || ||||| || | ||||||| | Sbjct 16561 TCGGAGTGGATGTTTTCCATCATAATCTGGAAGCCATAGAAGCAACGAGCCTCGGCGGCT 16502 Query 42422 TGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCA 42481 |||||||| | || ||||| | ||||| || || || |||||| || || Sbjct 16501 TGTACTTCACCGGAGAAGCGTTCGAGAAGGTTTTCATTGACGATACCGTCAGACGCCGCG 16442 Query 42482 AAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAA----TTTATTCCA 42537 || || || | || ||| || || | |||| | ||| | || ||||| Sbjct 16441 AAGAAAGCGAGAACGTGTGAAATGAAGTGGCGCTCGT-TGTCGTTCAGGCGGTTGTTCCA 16383 Query 42538 ATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTT 42597 |||| | ||| || || | ||| | ||||| | ||||| || || || || || || Sbjct 16382 GTCATGAAGATCCTTCGAGAGATCCATCTCTTCAGCTGTCCAGAACGACGCCTCCGCTTT 16323 Query 42598 TTTATACATATTCCAGAT 42615 || ||||| | |||||| Sbjct 16322 CTTGTACATCTGCCAGAT 16305 >seq178594 Length=29560 Score = 111 bits (122), Expect = 2e-19 Identities = 165/234 (71%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 72034 AAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCT 72093 || |||||||||||||| || || ||| | ||| | | | | |||||| || || Sbjct 5390 AAAAGATCAGGAATCCACAGTGCGTAAAACAAATCACGAGCGCGAGACTCCTCCTTGCCG 5449 Query 72094 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATG 72153 ||||| | |||||||||||| | | || ||| | |||||| || || | ||| ||| Sbjct 5450 TGGTTCTTCCTCAGATCGAGGAACTCGAAAACATCCGCATGCCATGGCTCGAGGTAGATG 5509 Query 72154 GCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 72213 || | | |||| || || ||||| || || ||||| | || | ||||||| || ||| Sbjct 5510 GCGAAAGCTCCGGGACGCTTGTTGCCACCTTGATCAACATAACGAGCGGTGGCATCATAG 5569 Query 72214 ACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAG 72267 ||| | ||| |||| || || ||||| |||||||||||||| || ||| Sbjct 5570 GCTCGGAGCATAGGAACGATTCCGTTGGAATAACCATTGGTCCCGGCAATGTAG 5623 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 669608255981640