Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Baeospora_20myosura_20[genbank_20GCA_5F001179705.1_202015-07-08] 182,489 sequences; 61,019,048 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq174905 140 3e-28 >seq174905 Length=21728 Score = 140 bits (154), Expect = 3e-28 Identities = 363/557 (65%), Gaps = 3/557 (1%) Strand=Plus/Plus Query 21476 CATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAA 21535 || || ||||| ||||| || ||||| | || || | |||||| ||||||||||| Sbjct 14670 CAGGCGAAATCGGTATGCATTCCCTCATCTCGGCTGATGAGTTCATTTGAAAATGTTAAG 14729 Query 21536 CCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCTCCTGAAAAGAAA 21595 || ||||| | || | ||| |||| |||||||||||| || || | || || ||||| Sbjct 14730 CCAGGCATGAGCCCCCGCTTCTTTATCCAAAATATTGAAGCGAACGAGCCAGAGAAGAAG 14789 Query 21596 ATGCCCTCAACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAGATTCTTTATCCAAT 21655 ||||| || || || ||||| || |||| || ||| | |||| || ||| || || Sbjct 14790 ATGCCTTCGACCGCGGCAAAAGCGACTAGACGCTCAGCAAATGTGGAGCCTTCGTCAGAT 14849 Query 21656 ATCCATTTTTCTGCCCATTTTGCCTTTTCTTTAATACAATCAATTGTATCAATAGCTTTT 21715 ||||| || ||||||| ||||| || || ||| |||||| || || || | Sbjct 14850 ATCCACTTGAGGGCCCATTCAGCCTTGCGCTTGATGCAAGGAATTGTCTCTATGGCGTCA 14909 Query 21716 AAAAGATGAtttttttCATCTACATCGGTTATGNNNNNNNNNNNNNNNNNACTATACATT 21775 || |||| | | ||| || | || | ||| ||| | Sbjct 14910 AATAGATACTCTCTTTGATTTGGGTCCTTGATGTAGGTGTCGATGAGAAGGGAATAGGTC 14969 Query 21776 TCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCCTCTGAACAT 21835 || | || | || || ||| || ||||| || || ||||| | ||| || | | Sbjct 14970 TCTGCGTGGACGTTCTCCATCATAATTTGAAACCCATAGAAACAGCGTGCTTCGGCGACT 15029 Query 21836 TGAACCTCGGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATCACTGGCGGCA 21895 || || ||| | || |||||| | | |||||||| || || || ||| |||||| Sbjct 15030 TGTACTTCGTTGGAGAAACGTTGAACAAGATTTTCATTGACGATACCGTCAGAAGCGGCA 15089 Query 21896 AAAAATGCCAATATATTTTTTATAAAATATCGTTCGTTATCTGTTA-AT--TTTTTCCAA 21952 || || || | || | | ||||||| |||||||| || ||| || || ||||| Sbjct 15090 AAGAAGGCAAGGATGTGTGAAATAAAATGGCGTTCGTTGTCGTTTAGATTGTTGTTCCAG 15149 Query 21953 TCTAATAAATCTTTTGATAAATCTACTTCTTCAGTTGTCCAAAAGCTAGCAATAGCCTTT 22012 || | || || | |||||||| | |||||||| |||||||| || ||||| Sbjct 15150 TCCATTAGGTCGTGAGATAAATCCAGTTCTTCAGCAGTCCAAAATGATGCCTCCGCCTTC 15209 Query 22013 TTATACATAATCCAGAT 22029 || ||||| |||||| Sbjct 15210 TTGTACATCTGCCAGAT 15226 Score = 95.1 bits (104), Expect = 1e-14 Identities = 112/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 21491 TGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCGGGCATTAATCCT 21550 |||| ||| ||||| | ||| || | || || || || || || |||||||| | ||| Sbjct 16846 TGCATACCCTCATCGCGACTGATGAGCTCGTTGGAGAAGGTCAAGCCGGGCATCATTCCA 16787 Query 21551 CTCTTTTTTAACCAAAATATTGACGCAAATGCTCCTGAAAAGAAAATGCCCTCAACGGCA 21610 | ||| || | ||| || || || || || | || ||||||||||| ||||||||||| Sbjct 16786 CGCTTCTTCATCCAGAAGATGGATGCGAACGACCCAGAAAAGAAAATCCCCTCAACGGCG 16727 Query 21611 GCAAATGCAACTAATCGTTCACCGTATGTAGA 21642 ||||| || || | ||||||||| | || || Sbjct 16726 GCAAAGGCGACAAGGCGTTCACCGAAAGTGGA 16695 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 530687474436360