Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Baeospora_20myosura_20[genbank_20GCA_5F001179705.1_202015-07-08] 182,489 sequences; 61,019,048 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq174905 215 6e-51 seq178594 102 1e-16 seq175565 91.5 2e-13 >seq174905 Length=21728 Score = 215 bits (238), Expect = 6e-51 Identities = 385/558 (69%), Gaps = 8/558 (1%) Strand=Plus/Plus Query 33304 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 33363 || ||||||||| |||| ||||| |||| || || ||||| || ||||| || | Sbjct 14670 CAGGCGAAATCGGTATGCATTCCCTCATCTCGGCTGATGAGTTCATTTGAAAATGTTAAG 14729 Query 33364 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAG 33423 || ||||| || || ||||| || | ||||||||| |||||||| || ||||| |||||| Sbjct 14730 CCAGGCATGAGCCCCCGCTTCTTTATCCAAAATATTGAAGCGAACGAGCCAGAGAAGAAG 14789 Query 33424 ATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCT---GTCATGT 33480 || ||||| || || ||||| || | || | ||| || | || || |||| | Sbjct 14790 ATGCCTTCGACCGCGGCAAAAGCGACTAGACGCTCAGCAAATGTGGAGCCTTCGTCAGAT 14849 Query 33481 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTA 33540 |||||||| | ||||| || ||||| || | ||||| || || |||||||| | | Sbjct 14850 ATCCACTTGAGGGCCCATTCAGCCTTGCGCTTGATGCAAGGAATTGTCTCTATGGCGTCA 14909 Query 33541 AAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATT 33600 || ||||| | | ||| ||| || || | || || ||||| | ||| ||| | Sbjct 14910 AATAGATACTCTCTTTGATTTGGGTCCTTGATGTAGGTGTCGATGAGAAGGGAATAGGTC 14969 Query 33601 TCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATC 33660 || | || | ||| || || || ||||| || |||||||| | || |||| | Sbjct 14970 TCTGCGTGGACGTTCTCCATCATAATTTGAAACCCATAGAAACAGCGTGCTTCGGCGACT 15029 Query 33661 TGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGCA 33720 |||||||| | | || |||| | | ||||||||| || || |||||| || ||| Sbjct 15030 TGTACTTCGTTGGAGAAACGTTGAACAAGATTTTCATTGACGATACCGTCAGAAGCGGCA 15089 Query 33721 AAAAACGCCAATACATGTTTTATAAAATATTTTTCGTC-TGGTGTTAGTTTATT---CCA 33776 || || || | | ||| ||||||| ||||| | || |||| || || ||| Sbjct 15090 AAGAAGGCAAGGATGTGTGAAATAAAATGGCGTTCGTTGTCGT-TTAGATTGTTGTTCCA 15148 Query 33777 ATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTT 33836 || | | || | ||||| ||| | |||||| | ||||||||||||||||| ||||| Sbjct 15149 GTCCATTAGGTCGTGAGATAAATCCAGTTCTTCAGCAGTCCAAAATGATGCCTCCGCCTT 15208 Query 33837 TTTATACATGTTCCAGAT 33854 || ||||| | |||||| Sbjct 15209 CTTGTACATCTGCCAGAT 15226 Score = 158 bits (174), Expect = 2e-33 Identities = 371/558 (66%), Gaps = 8/558 (1%) Strand=Plus/Minus Query 33304 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 33363 || ||||| ||| ||||| |||||| || | ||| || || |||||||| || || | Sbjct 16861 CAGGCGAAGTCGGTGTGCATACCCTCATCGCGACTGATGAGCTCGTTGGAGAAGGTCAAG 16802 Query 33364 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAG 33423 |||||||| | |||||||| || | ||| || ||||| ||||| || ||||||||||| Sbjct 16801 CCGGGCATCATTCCACGCTTCTTCATCCAGAAGATGGATGCGAACGACCCAGAAAAGAAA 16742 Query 33424 ATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCT---GTCATGT 33480 || || || || || |||||||| | ||| | || || || || || ||| Sbjct 16741 ATCCCCTCAACGGCGGCAAAGGCGACAAGGCGTTCACCGAAAGTGGAACTCTGGTCGGAG 16682 Query 33481 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTA 33540 |||||||| | ||||| || ||||| ||| | || || || ||||| | || | Sbjct 16681 ATCCACTTGAGGGCCCAGTCAGCCTTGCGTTTGATGCAGGGAATGGTTTCAACAGCGTCG 16622 Query 33541 AAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATT 33600 || || ||| || | ||||| | || || ||||| | ||| || || Sbjct 16621 AACAGGAAGTCGCGTTGAGCGGGCTCTTTGATGTACGTGTCGATGAGGAGAGAGTAGGTT 16562 Query 33601 TCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATC 33660 || || || |||||||| || ||||| || || ||||| || | |||||||| Sbjct 16561 TCGGAGTGGATGTTTTCCATCATAATCTGGAAGCCATAGAAGCAACGAGCCTCGGCGGCT 16502 Query 33661 TGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGCA 33720 |||||||| | || ||||| | |||||||| || || |||||| || || Sbjct 16501 TGTACTTCACCGGAGAAGCGTTCGAGAAGGTTTTCATTGACGATACCGTCAGACGCCGCG 16442 Query 33721 AAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT----AGTTTATTCCA 33776 || || || | || ||| || || | |||| || ||| | || ||||| Sbjct 16441 AAGAAAGCGAGAACGTGTGAAATGAAGTGGCGCTCGT-TGTCGTTCAGGCGGTTGTTCCA 16383 Query 33777 ATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTT 33836 |||| | ||| || || | ||| | ||||| ||||||| || || ||||| || || Sbjct 16382 GTCATGAAGATCCTTCGAGAGATCCATCTCTTCAGCTGTCCAGAACGACGCCTCCGCTTT 16323 Query 33837 TTTATACATGTTCCAGAT 33854 || ||||| | |||||| Sbjct 16322 CTTGTACATCTGCCAGAT 16305 >seq178594 Length=29560 Score = 102 bits (112), Expect = 1e-16 Identities = 163/234 (70%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 63228 AAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCT 63287 || |||||||||||||| || || ||| | ||| | | | | ||||| || || Sbjct 5390 AAAAGATCAGGAATCCACAGTGCGTAAAACAAATCACGAGCGCGAGACTCCTCCTTGCCG 5449 Query 63288 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATG 63347 ||||| | |||||||||||| | | || ||| | |||||| || || | ||| ||| Sbjct 5450 TGGTTCTTCCTCAGATCGAGGAACTCGAAAACATCCGCATGCCATGGCTCGAGGTAGATG 5509 Query 63348 GCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 63407 || | | |||| || || ||||| || || ||||| | || | ||||||| || ||| Sbjct 5510 GCGAAAGCTCCGGGACGCTTGTTGCCACCTTGATCAACATAACGAGCGGTGGCATCATAG 5569 Query 63408 ACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAG 63461 ||| | ||| |||| || ||||| || ||||||||| |||| || ||| Sbjct 5570 GCTCGGAGCATAGGAACGATTCCGTTGGAATAACCATTGGTCCCGGCAATGTAG 5623 >seq175565 Length=26152 Score = 91.5 bits (100), Expect = 2e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 33295 AACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAA 33354 |||| | ||| ||||| || ||| | || |||||||| || || || ||||||||| Sbjct 8115 AACACGAGACAGGCGAAGTCAGTGTGTATCCCTTCGTCTCTGCTGATAAGCTCGTTGGAA 8174 Query 33355 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCA 33414 |||||||| ||||||| ||| | ||| || |||||| ||||||| || || || | Sbjct 8175 AACGTGAGGCCGGGCAAAAGGTTCCTCTTCTTGAGCCAATATATGGAGGCAAACGAGCTC 8234 Query 33415 GAAAAGAAGATTCCTTCTAC 33434 || ||| ||||||||| || Sbjct 8235 GAGAAGTGGATTCCTTCGAC 8254 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 621526187355240