Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Baeospora_20myosura_20[genbank_20GCA_5F001179705.1_202015-07-08] 182,489 sequences; 61,019,048 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq174905 187 5e-42 >seq174905 Length=21728 Score = 187 bits (206), Expect = 5e-42 Identities = 317/456 (70%), Gaps = 5/456 (1%) Strand=Plus/Plus Query 42423 CTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATG 42482 || || |||||||| || |||||||| || |||||||| ||||| | | ||| Sbjct 16431 CTCGCTTTCTTCGCGGCGTCTGACGGTATCGTCAATGAAAACCTTCTCGAACGCTTCTCC 16490 Query 42483 AAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAAC 42542 || || || | ||||| || |||||||| ||||||||||| || || ||| Sbjct 16491 GGTGAAGTACAAGCCGCCGAGGCTCGTTGCTTCTATGGCTTCCAGATTATGATGGAAAAC 16550 Query 42543 GTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGAGCGT 42602 | ||||| || ||| | || || ||||||||||| || |||| | || Sbjct 16551 ATCCACTCCGAAACCTACTCTCTCCTCATCGACACGTACATCAAAGAGCCCGCTCAACGC 16610 Query 42603 AACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCG 42662 || |||||| | || | || || || ||||||||||| ||||| |||||||| Sbjct 16611 GACTTCCTGTTCGACGCTGTTGAAACCATTCCCTGCATCAAACGCAAGGCTGACTGGGCC 16670 Query 42663 CTCAACTGGATCGAGAGTCCCGACG-CAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGC 42721 ||||| |||||| | || || | || ||||| || | || || |||||| |||| Sbjct 16671 CTCAAGTGGATCTCC-GACCAGAGTTCCACTTTCGGTGAACGCCTTGTCGCCTTTGCCGC 16729 Query 42722 CGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAAGGT 42781 ||| ||||| || ||||| || || | ||||| |||||||||||| | ||| || | Sbjct 16730 CGTTGAGGGGATTTTCTTTTCTGGGTCGTTCGCATCCATCTTCTGGATGAAGAAGCGTGG 16789 Query 42782 GTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATAG 42841 ||||||||| | |||||||| ||||| |||||||| | || ||||| |||| | Sbjct 16790 AATGATGCCCGGCTTGACCTTCTCCAACGAGCTCATCAGTCGCGATGAGGGTATGCACAC 16849 Query 42842 GGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAG 42877 ||||| |||||||| ||||| |||||||| || Sbjct 16850 CGACTTCGCCTGCCTTTTGTTC---AGCCACCTGAG 16882 Score = 159 bits (176), Expect = 7e-34 Identities = 309/450 (69%), Gaps = 16/450 (4%) Strand=Plus/Minus Query 42418 ACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGC-CACCAGG 42476 |||| || |||||||| ||||| |||||||| || |||||||| || || | || | | Sbjct 15105 ACATCCTTGCCTTCTTTGCCGCTTCTGACGGTATCGTCAATGAAAATCTTGTTCAAC-GT 15047 Query 42477 TTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATA 42536 ||| || || || || | || || ||||| ||||| || || || || || Sbjct 15046 TTCTCCAACGAAGTACAAGTCGCCGAAGCACGCTGTTTCTATGGGTTTCAAATTATGATG 14987 Query 42537 GAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCG-T 42595 |||||||| ||| | ||| || || || || |||| |||||| ||| || | Sbjct 14986 GAGAACGTCCACGCAGAGACCTATTCCCTTCTCATCGACACCTACATCAAGGACCCAAAT 14927 Query 42596 C---GAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGC 42652 | ||| ||| | | || | ||||| ||||| || || ||||||||| ||||| Sbjct 14926 CAAAGAGAGTATC----TATTTGACGCCATAGAGACAATTCCTTGCATCAAGCGCAAGGC 14871 Query 42653 GGACTGGGCGCTCAACTGGATCGAGAGTCCCGACG---CAACGTTCGGCGAGAGGCTGGT 42709 || ||||| ||||| ||||| | ||| | | || || | ||| | || || Sbjct 14870 TGAATGGGCCCTCAAGTGGATATC---TGACGAAGGCTCCACATTTGCTGAGCGTCTAGT 14814 Query 42710 AGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCT 42769 || ||| |||| ||||| |||||||||||||| ||| | ||||| || || || ||| | Sbjct 14813 CGCTTTTGCCGCGGTCGAAGGCATCTTCTTCTCTGGCTCGTTCGCTTCAATATTTTGGAT 14754 Query 42770 CAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGA 42829 ||| || || | ||||| || | || || || || |||||||||||| | || || Sbjct 14753 AAAGAAGCGGGGGCTCATGCCTGGCTTAACATTTTCAAATGAACTCATCAGCCGAGATGA 14694 Query 42830 GGGGCTGCATAGGGACTTTGCCTGCCTCCT 42859 ||| |||||| || || ||||||||||| Sbjct 14693 GGGAATGCATACCGATTTCGCCTGCCTCCT 14664 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 942185056046640