Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Baeospora_20myosura_20[genbank_20GCA_5F001179705.1_202015-07-08] 182,489 sequences; 61,019,048 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq181137 138 3e-27 seq174905 95.1 3e-14 >seq181137 Length=58212 Score = 138 bits (152), Expect = 3e-27 Identities = 170/231 (74%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 |||||| || || | ||| |||||||| | || ||||| || || || || || | Sbjct 1614 TCCACCACGCAGACGAAGGACGAGATGGAGAGTCGACTCTTTCTGAATGTTGTAATCAGA 1673 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 || ||||| || ||||| | || || || |||||||| ||||| ||||| ||||| Sbjct 1674 AAGGGTGCGGCCATCTTCGAGCTGCTTGCCGGCGAAGATAAGACGTTGTTGG---TCTGG 1730 Query 288366 G---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTC 288422 | || || || ||||||||||| ||||| ||||| || || || | || || || Sbjct 1731 GGGGATGCCCTCCTTATCCTGGATCTTCGCCTTCACATTATCGATGGTGTCAGAGGACTC 1790 Query 288423 TACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || ||||| |||||||||||||| || || ||||||||||| |||||||| Sbjct 1791 CACCTCGAGGGTGATCGTCTTCCCTGTGAGGGTCTTGACGAAGATCTGCAT 1841 Score = 131 bits (144), Expect = 4e-25 Identities = 144/192 (75%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||||||||| || | || || || || || || || || || || |||||| Sbjct 1423 TCCTTCTGGATATTATAATCCGAAAGGGTACGACCATCCTCCAACTGCTTCCCGGCGAAG 1482 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || ||||| || ||| | || || ||||| || |||||||| ||||| |||||||| Sbjct 1483 ATGAGACGTTGCTGATCAGGAGGAATGCCTTCCTTGTCCTGGATCTTCGCCTTCACGTTG 1542 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | || || || || || |||||||||||||| || || || ||||||||| Sbjct 1543 TCGATGGTGTCCGAAGACTCCACCTCCAGCGTGATCGTCTTGCCCGTGAGGGTCTTGACG 1602 Query 288463 AATATCTGCATT 288474 || ||||||||| Sbjct 1603 AAGATCTGCATT 1614 Score = 111 bits (122), Expect = 4e-19 Identities = 167/235 (71%), Gaps = 7/235 (3%) Strand=Plus/Plus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| ||||| || || | || |||||||||| || || || ||||| || |||| Sbjct 1839 CATG-CCACCACGCAGACGGAGGACGAGATGAAGGGTAGACTCCTTCTGGATGTTGTAGT 1897 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 ||| | || || |||||||| | || || || || ||||| |||||||| || | Sbjct 1898 CGGATAAGGTACGGCCGTCTTCGAGCTGCTTCCCGGCAAAGATAAGACGCTGCTGG---T 1954 Query 288362 CTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCG 288418 ||||| || || || || || || || || ||||||||||| || || | ||| | Sbjct 1955 CTGGGGGAATACCCTCCTTGTCTTGAATCTTTGCTTTCACGTTGTCAATGGTATCCGAAG 2014 Query 288419 ATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 | || || || || ||||| ||||| || || || ||||| || || |||||||| Sbjct 2015 ACTCCACCTCAAGAGTGATGGTCTTGCCCGTGAGGGTCTTAACAAAGATCTGCAT 2069 >seq174905 Length=21728 Score = 95.1 bits (104), Expect = 3e-14 Identities = 118/162 (73%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 269152 ATCGGTATGAATGCCGATCTCATGAATCAATATATCGAATTCGTGGCTGATCGTATCTTC 269211 ||||| |||||||| | |||||| || || ||||| ||||| || || ||| | | Sbjct 17027 ATCGGCATGAATGCTAAGCTCATGTGCCAGTACATCGAGTTCGTTGCCGACCGTCTGCTT 17086 Query 269212 ACGGCACTCGGTTATGAGAAAGTGTACAATTCGAAGAATCCCTTCGCCTTTATGGAACTA 269271 | || || |||| || || ||||| || | || ||||||| ||| ||||| | Sbjct 17087 GTATCTCTGGGCAATGACAAGGTCTACAACTCCACCAACCCCTTCGACTTCATGGACATG 17146 Query 269272 ATTTCGCTCGAAGGAAAGACGAACTTCTTCGAAAAGCGTGTC 269313 || |||||| | || ||||| ||||||||||| ||||||||| Sbjct 17147 ATCTCGCTCCAGGGCAAGACCAACTTCTTCGAGAAGCGTGTC 17188 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1176896202492542