Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Baeospora_20myosura_20[genbank_20GCA_5F001179705.1_202015-07-08] 182,489 sequences; 61,019,048 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq181137 98.7 9e-16 seq174905 95.1 1e-14 seq173931 86.0 6e-12 >seq181137 Length=58212 Score = 98.7 bits (108), Expect = 9e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 |||||| || | || | || | ||| | || |||||||| ||||| |||||||| Sbjct 1614 TCCACCACGCAGACGAAGGACGAGATGGAGAGTCGACTCTTTCTGAATGTTGTAATCAGA 1673 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 | ||||| ||| || ||||| || || ||| |||| | || || || || || || Sbjct 1674 AAGGGTGCGGCCATCTTCGAGCTGCTTGCCGGCGAAGATAAGACGTTGTTGGTCTGGGGG 1733 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 ||||||||||| ||| ||| ||| ||| | | |||| |||||| | ||| || Sbjct 1734 GATGCCCTCCTTATCCTGGATCTTCGCCTTCACATTATCGATGGTGTCAGAGGACTCCAC 1793 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 |||| ||| | ||| || || || || || || || || ||||||||| Sbjct 1794 CTCGAGGGTGATCGTCTTCCCTGTGAGGGTCTTGACGAAGATCTGCATG 1842 >seq174905 Length=21728 Score = 95.1 bits (104), Expect = 1e-14 Identities = 121/167 (72%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 47412 GGAATGAACGCGGAGATGATGAGAAAGTACATCGAATTTGTCGCCGACCGCCTGCTCGTT 47471 || ||||| || || | ||| | |||||||||| || || |||||||| ||||| || Sbjct 17030 GGCATGAATGCTAAGCTCATGTGCCAGTACATCGAGTTCGTTGCCGACCGTCTGCTTGTA 17089 Query 47472 CAGCTAAAGTATCCCAAGATTTACCACACCGAGAATCCATTCGAGTTTATGAACAACATT 47531 || || |||| | ||| || || || || ||||| || ||| ||| || Sbjct 17090 TCTCTGGGCAATGACAAGGTCTACAACTCCACCAACCCCTTCGACTTCATGGACATGATC 17149 Query 47532 TCGCTCGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGGCGAATA 47578 |||||| |||||||||||||||| ||||||||||| ||| ||||| Sbjct 17150 TCGCTCCAGGGCAAGACCAACTTCTTCGAGAAGCGTGTCTCGGAATA 17196 >seq173931 Length=6298 Score = 86.0 bits (94), Expect = 6e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 126884 GCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCG 126943 || ||||| || | |||||||||| || | |||||||| || || || ||||| ||| Sbjct 5737 GCACCACCACGAAGACGCAACACCAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCG 5678 Query 126944 CCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGA 127003 | | |||||| ||| || ||||| |||||||| |||||| || ||||||||||| Sbjct 5677 CTGAGAGTGCGACCATCTTCGAGCTGCTTTCCAGCAAAGATCAGACGTTGCTGATCGGGG 5618 Query 127004 GGTAT 127008 || || Sbjct 5617 GGGAT 5613 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 474416129181360