Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Baeospora_20myosura_20[genbank_20GCA_5F001179705.1_202015-07-08] 182,489 sequences; 61,019,048 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq181137 111 1e-19 seq179408 82.4 5e-11 seq179407 82.4 5e-11 seq178676 82.4 5e-11 >seq181137 Length=58212 Score = 111 bits (122), Expect = 1e-19 Identities = 143/195 (73%), Gaps = 8/195 (4%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 |||||||||||||| || || |||||| | || |||| || ||||| || ||||| || Sbjct 1651 TCTTTCTGAATGTTGTAATCAGAAAGGGTGCGGCCATCTTCGAGCTGCTTGCCGGCGAAG 1710 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || ||||| |||||| | || | |||||||| || |||||| || || || Sbjct 1711 ATAAGACGTTGTTGGTCTGGGGGGATGCCCTCCTTATCCTGGATCTTCGCCTTCAC--AT 1768 Query 34911 GCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTT 34966 ||||||| ||| || ||| || |||| ||| || || || || ||||| ||||| Sbjct 1769 --TATCGATGGTGTCAGAGGACTCCACCTCGAGGGTGATCGTCTTCCCTGTGAGGGTCTT 1826 Query 34967 CACAAAGATCTGCAT 34981 || ||||||||||| Sbjct 1827 GACGAAGATCTGCAT 1841 Score = 102 bits (112), Expect = 5e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| || | | | || | || || ||||| || |||||||| Sbjct 1879 TCCTTCTGGATGTTGTAGTCGGATAAGGTACGGCCGTCTTCGAGCTGCTTCCCGGCAAAG 1938 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || ||||||||| | || | ||||||||||| |||||| ||| ||| Sbjct 1939 ATAAGACGCTGCTGGTCTGGGGGAATACCCTCCTTGTCTTGAATCTTTGCTTTCACGTTG 1998 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | || | ||| || || | || ||||| || |||||||| ||||| ||| Sbjct 1999 TCAATGGTATCCGAAGACTCCACCTCAAGAGTGATGGTCTTGCCCGTGAGGGTCTTAACA 2058 Query 34971 AAGATCTGCAT 34981 ||||||||||| Sbjct 2059 AAGATCTGCAT 2069 Score = 89.7 bits (98), Expect = 3e-13 Identities = 138/195 (71%), Gaps = 8/195 (4%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| || ||||| ||||||||| | || |||| |||| ||| || ||||| || Sbjct 1423 TCCTTCTGGATATTATAATCCGAAAGGGTACGACCATCCTCCAACTGCTTCCCGGCGAAG 1482 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || |||||||| || | || | || |||||||| |||||| || ||| Sbjct 1483 ATGAGACGTTGCTGATCAGGAGGAATGCCTTCCTTGTCCTGGATCTTCGCCTTCACGT-- 1540 Query 34911 GCTATCGAT--TCACCG--GCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTT 34966 | ||||| | ||| | ||| || || | || || || || |||||||| ||||| Sbjct 1541 --TGTCGATGGTGTCCGAAGACTCCACCTCCAGCGTGATCGTCTTGCCCGTGAGGGTCTT 1598 Query 34967 CACAAAGATCTGCAT 34981 || ||||||||||| Sbjct 1599 GACGAAGATCTGCAT 1613 >seq179408 Length=3068 Score = 82.4 bits (90), Expect = 5e-11 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||| | ||| || ||||| |||||||||||||| ||| |||| |||| || Sbjct 2870 ACCAAGTGCAAAGTGGACTCCTTCTGGATGTTATAGTCCGACAGGGTTCGGCCATCCTCG 2929 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTC 34867 ||||| |||||||| || || || || |||||||| Sbjct 2930 AGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTC 2964 >seq179407 Length=3065 Score = 82.4 bits (90), Expect = 5e-11 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||| | ||| || ||||| |||||||||||||| ||| |||| |||| || Sbjct 2867 ACCAAGTGCAAAGTGGACTCCTTCTGGATGTTATAGTCCGACAGGGTTCGGCCATCCTCG 2926 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTC 34867 ||||| |||||||| || || || || |||||||| Sbjct 2927 AGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTC 2961 >seq178676 Length=5582 Score = 82.4 bits (90), Expect = 5e-11 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||| | ||| || ||||| |||||||||||||| ||| |||| |||| || Sbjct 4682 ACCAAGTGCAAAGTGGACTCCTTCTGGATGTTATAGTCCGACAGGGTTCGGCCATCCTCG 4623 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTC 34867 ||||| |||||||| || || || || |||||||| Sbjct 4622 AGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTC 4588 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323911587381192