Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Baeospora_20myosura_20[genbank_20GCA_5F001179705.1_202015-07-08] 182,489 sequences; 61,019,048 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq174905 143 4e-28 >seq174905 Length=21728 Score = 143 bits (158), Expect = 4e-28 Identities = 232/330 (70%), Gaps = 9/330 (3%) Strand=Plus/Minus Query 794340 ACCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTT 794399 ||| || ||||||||||| | |||||| ||| | ||||||||| | || ||||| Sbjct 16841 ACCCTCATCGCGACTGATGAGCTCGTTGGAGAAGGTCAAGCCGGGCATCATTCCACGCTT 16782 Query 794400 CTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 794459 ||| | ||| ||||||| ||| || || || || || ||||| ||||||||||| Sbjct 16781 CTTCATCCAGAAGATGGATGCGAACGACCCAGAAAAGAAAATCCCCTCAACGGCGGCAAA 16722 Query 794460 GCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCT--TTGTTGATCCACTTCATCGCC 794517 | |||| || || || | |||||| | |||| | | ||||||||| | ||| Sbjct 16721 GGCGACAAGGCGTTCACCGAAAGTG-----GAACTCTGGTCGGAGATCCACTTGAGGGCC 16667 Query 794518 CACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTC 794577 || || ||||| | | |||| | || || | ||| || ||| ||| Sbjct 16666 CAGTCAGCCTTGCGTTTGATGCAGGGAATGGTTTCAACAGCGTCGAACAGGAAGTCGCGT 16607 Query 794578 TCGACCGGG-TCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTT 794636 | || |||| || |||| ||| |||||||||||||| |||||||| || ||||||||||| Sbjct 16606 T-GAGCGGGCTCTTTGATGTACGTGTCGATGAGGAGAGAGTAGGTTTCGGAGTGGATGTT 16548 Query 794637 TTCGATGGCGATCTGGAAGCCATAAAAGCA 794666 ||| || |||||||||||||| ||||| Sbjct 16547 TTCCATCATAATCTGGAAGCCATAGAAGCA 16518 Score = 138 bits (152), Expect = 2e-26 Identities = 227/327 (69%), Gaps = 3/327 (1%) Strand=Plus/Plus Query 794341 CCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTC 794400 || || || || ||||| | ||| || ||| | ||| |||||||| || |||||| Sbjct 14691 CCCTCATCTCGGCTGATGAGTTCATTTGAAAATGTTAAGCCAGGCATGAGCCCCCGCTTC 14750 Query 794401 TTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 794460 || | |||||| || | | ||| ||| ||||| |||||||| ||||| |||||||| Sbjct 14751 TTTATCCAAAATATTGAAGCGAACGAGCCAGAGAAGAAGATGCCTTCGACCGCGGCAAAA 14810 Query 794461 CCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCCAC 794520 |||| || ||||| ||||| ||| ||| || | |||||||| | ||||| Sbjct 14811 GCGACTAGACGCTCAGCAAATGTGGA---GCCTTCGTCAGATATCCACTTGAGGGCCCAT 14867 Query 794521 TCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTCTCG 794580 || ||||| | | | | || | || || |||||| ||| || | || | | Sbjct 14868 TCAGCCTTGCGCTTGATGCAAGGAATTGTCTCTATGGCGTCAAATAGATACTCTCTTTGA 14927 Query 794581 ACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTCG 794640 |||||||||| ||||||||||||||| || || |||||||||| ||||| ||| || Sbjct 14928 TTTGGGTCCTTGATGTAGGTGTCGATGAGAAGGGAATAGGTCTCTGCGTGGACGTTCTCC 14987 Query 794641 ATGGCGATCTGGAAGCCATAAAAGCAG 794667 || || || || ||||| || ||| Sbjct 14988 ATCATAATTTGAAACCCATAGAAACAG 15014 Score = 120 bits (132), Expect = 5e-21 Identities = 125/164 (76%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 793917 ACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATCCACGGGAAC 793976 || ||| |||||| |||||||||||||||| ||||||||||| ||||| | ||| Sbjct 17187 ACACGCTTCTCGAAGAAGTTGGTCTTGCCCTGGAGCGAGATCATGTCCATGAAGTCGAAG 17128 Query 793977 GGGTTGGCCGTCAGGTAGTGCTTCTCGCACCCGAGCGACGCAAGCAGGCGGTCGGCGACG 794036 ||||||| | |||| ||| || || || || ||||||| |||||||| ||| Sbjct 17127 GGGTTGGTGGAGTTGTAGACCTTGTCATTGCCCAGAGATACAAGCAGACGGTCGGCAACG 17068 Query 794037 AATTCAATGTACTGGCACATGAGGGCGGCGTTCATGCCGATGAG 794080 || || ||||||||||||||||| || |||||||||||||| Sbjct 17067 AACTCGATGTACTGGCACATGAGCTTAGCATTCATGCCGATGAG 17024 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7896834212737671