Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Baeospora_20myosura_20[genbank_20GCA_5F001179705.1_202015-07-08] 182,489 sequences; 61,019,048 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq181137 136 3e-27 seq179408 96.9 2e-15 seq179407 96.9 2e-15 seq178676 96.9 2e-15 >seq181137 Length=58212 Score = 136 bits (150), Expect = 3e-27 Identities = 158/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||| || |||| ||| ||||||||| ||||| ||||| |||| | | || | || Sbjct 1858 AGGACGAGATGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGGATAAGGTACGGCCGTCT 1917 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || ||||| ||||| ||||| || || ||||||||| | || | ||||||||||| Sbjct 1918 TCGAGCTGCTTCCCGGCAAAGATAAGACGCTGCTGGTCTGGGGGAATACCCTCCTTGTCT 1977 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || ||| ||| ||| | || | || | ||| || |||| || |||||| Sbjct 1978 TGAATCTTTGCTTTCACGTTGTCAATGGTATCCGAAGACTCCACCTCAAGAGTGATGGTC 2037 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 || |||||||||||||| ||||||||||||||| Sbjct 2038 TTGCCCGTGAGGGTCTTAACAAAGATCTGCATG 2070 Score = 120 bits (132), Expect = 2e-22 Identities = 146/197 (74%), Gaps = 8/197 (4%) Strand=Plus/Plus Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845 ||| ||||||||||| || || || ||| |||| |||| || || ||||| |||||||| Sbjct 1650 CTCTTTCTGAATGTTGTAATCAGAAAGGGTGCGGCCATCTTCGAGCTGCTTGCCGGCGAA 1709 Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905 ||| || ||||| |||||| | || | |||||||| || | || || || || | Sbjct 1710 GATAAGACGTTGTTGGTCTGGGGGGATGCCCTCCTTATCCTGGATCTTCGCCTTCAC--A 1767 Query 34906 TGCTATCGAT----TCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCT 34961 | ||||||| ||| || ||| || || | ||| || ||||| || |||||||||| Sbjct 1768 T--TATCGATGGTGTCAGAGGACTCCACCTCGAGGGTGATCGTCTTCCCTGTGAGGGTCT 1825 Query 34962 TTACAAAGATCTGCATG 34978 | || |||||||||||| Sbjct 1826 TGACGAAGATCTGCATG 1842 Score = 104 bits (114), Expect = 2e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845 ||||||||| || ||||| ||||| ||| | || |||| |||| ||||| |||||||| Sbjct 1422 CTCCTTCTGGATATTATAATCCGAAAGGGTACGACCATCCTCCAACTGCTTCCCGGCGAA 1481 Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905 ||| || |||||||| || | || | || |||||||| | || || || ||| Sbjct 1482 GATGAGACGTTGCTGATCAGGAGGAATGCCTTCCTTGTCCTGGATCTTCGCCTTCACGTT 1541 Query 34906 TGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTAC 34965 | || | || | ||| || || | || || ||||| |||||||||||||| || Sbjct 1542 GTCGATGGTGTCCGAAGACTCCACCTCCAGCGTGATCGTCTTGCCCGTGAGGGTCTTGAC 1601 Query 34966 AAAGATCTGCAT 34977 ||||||||||| Sbjct 1602 GAAGATCTGCAT 1613 >seq179408 Length=3068 Score = 96.9 bits (106), Expect = 2e-15 Identities = 80/98 (82%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||||| ||| | ||| ||||||||| |||||||||||||| ||| | || |||| Sbjct 2867 AGGACCAAGTGCAAAGTGGACTCCTTCTGGATGTTATAGTCCGACAGGGTTCGGCCATCC 2926 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTC 34863 || || ||||||||||||||||| || || |||||||| Sbjct 2927 TCGAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTC 2964 >seq179407 Length=3065 Score = 96.9 bits (106), Expect = 2e-15 Identities = 80/98 (82%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||||| ||| | ||| ||||||||| |||||||||||||| ||| | || |||| Sbjct 2864 AGGACCAAGTGCAAAGTGGACTCCTTCTGGATGTTATAGTCCGACAGGGTTCGGCCATCC 2923 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTC 34863 || || ||||||||||||||||| || || |||||||| Sbjct 2924 TCGAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTC 2961 >seq178676 Length=5582 Score = 96.9 bits (106), Expect = 2e-15 Identities = 80/98 (82%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||||| ||| | ||| ||||||||| |||||||||||||| ||| | || |||| Sbjct 4685 AGGACCAAGTGCAAAGTGGACTCCTTCTGGATGTTATAGTCCGACAGGGTTCGGCCATCC 4626 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTC 34863 || || ||||||||||||||||| || || |||||||| Sbjct 4625 TCGAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTC 4588 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324968431630691