Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Baeospora_20myosura_20[genbank_20GCA_5F001179705.1_202015-07-08] 182,489 sequences; 61,019,048 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq181137 105 2e-17 seq173931 86.0 1e-11 >seq181137 Length=58212 Score = 105 bits (116), Expect = 2e-17 Identities = 147/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || |||||||| || |||||||| | || ||||| |||||| Sbjct 1838 CAGATCTTCGTCAAGACCCTCACAGGGAAGACGATCACCCTCGAGGTGGAGTCCTCTGAC 1779 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||| ||||| || || || || || || || ||| ||| Sbjct 1778 ACCATCGATAATGTGAAGGCGAAGATCCAGGATAAGGAGGGCATCCCCCCAGACCAACAA 1719 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | |||||||||||||| |||||| | |||||||| | || | | ||||||||| | Sbjct 1718 CGTCTTATCTTCGCCGGCAAGCAGCTCGAAGATGGCCGCACCCTTTCTGATTACAACATT 1659 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||||||||| ||||| || || || Sbjct 1658 CAGAAAGAGTCGACTCTCCATCTCGT 1633 Score = 105 bits (116), Expect = 2e-17 Identities = 149/207 (72%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| || || ||||| || || || |||||| | || ||||| ||| || Sbjct 2066 CAGATCTTTGTTAAGACCCTCACGGGCAAGACCATCACTCTTGAGGTGGAGTCTTCGGAT 2007 Query 206233 ACAGTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 || | || || |||||||| ||||||||| || || || ||| || ||| || Sbjct 2006 ACCATTGACAACGTGAAAGCAAA-GATTCAAGACAAGGAGGGTATTCCCCCAGACCAGCA 1948 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351 | |||||||| ||||| |||||| | ||||| || | || || |||| |||||| | Sbjct 1947 GCGTCTTATCTTTGCCGGGAAGCAGCTCGAAGACGGCCGTACCTTATCCGACTACAACAT 1888 Query 206352 CCAGAAAGAGTCTACTCTTCACCTTGT 206378 |||||| |||||||| ||||| || || Sbjct 1887 CCAGAAGGAGTCTACCCTTCATCTCGT 1861 Score = 104 bits (114), Expect = 6e-17 Identities = 143/200 (72%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || ||||| || || |||||||| |||| ||||| ||| ||| Sbjct 1610 CAGATCTTCGTCAAGACCCTCACGGGCAAGACGATCACGCTGGAGGTGGAGTCTTCGGAC 1551 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||| ||||| || || || ||||| ||| || || ||| Sbjct 1550 ACCATCGACAACGTGAAGGCGAAGATCCAGGACAAGGAAGGCATTCCTCCTGATCAGCAA 1491 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || ||||||||||| ||||||||||| ||||| | || | | ||||| || || Sbjct 1490 CGTCTCATCTTCGCCGGGAAGCAGTTGGAGGATGGTCGTACCCTTTCGGATTATAATATC 1431 Query 206353 CAGAAAGAGTCTACTCTTCA 206372 ||||| ||||| |||||||| Sbjct 1430 CAGAAGGAGTCGACTCTTCA 1411 >seq173931 Length=6298 Score = 86.0 bits (94), Expect = 1e-11 Identities = 82/105 (78%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811 ||||| | ||| || ||||| ||||||||||| ||||||| || ||||| | ||| Sbjct 5728 CGAAGACGCAACACCAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGCTGAGAGTG 5669 Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 | |||||||| ||||||||||| || ||||| || ||||| ||| Sbjct 5668 CGACCATCTTCGAGCTGCTTTCCAGCAAAGATCAGACGTTGCTGA 5624 Score = 84.2 bits (92), Expect = 5e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 206290 CAAAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAAC 206349 ||| | || ||||| || ||||||||| | |||||||| | ||| | ||| |||||| Sbjct 5628 CAACGTCTGATCTTTGCTGGAAAGCAGCTCGAAGATGGTCGCACTCTCAGCGACTACAAC 5687 Query 206350 GTCCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 ||||||| ||||||||||| ||||| || ||| | ||||| Sbjct 5688 ATCCAGAAGGAGTCTACTCTCCACCTGGTGTTGCGTCTTCG 5728 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179057537145369