Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Baeospora_20myosura_20[genbank_20GCA_5F001179705.1_202015-07-08] 182,489 sequences; 61,019,048 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq181137 116 4e-21 seq173931 91.5 1e-13 >seq181137 Length=58212 Score = 116 bits (128), Expect = 4e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 134505 ACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCG 134564 ||||| || || || || ||||| || |||||||||||| | ||| | ||| ||| Sbjct 1861 ACGAGATGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGGATAAGGTACGGCCGTCTTCG 1920 Query 134565 AGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGA 134624 ||||| || || ||||| || | ||||||||| || || || || || || || |||||| Sbjct 1921 AGCTGCTTCCCGGCAAAGATAAGACGCTGCTGGTCTGGGGGAATACCCTCCTTGTCTTGA 1980 Query 134625 ATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTA 134684 || ||| ||| || ||| | || || || || ||||| || ||||| ||||| || Sbjct 1981 ATCTTTGCTTTCACGTTGTCAATGGTATCCGAAGACTCCACCTCAAGAGTGATGGTCTTG 2040 Query 134685 CCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || | || ||||| || || ||||| Sbjct 2041 CCCGTGAGGGTCTTAACAAAGATCTGCAT 2069 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 134505 ACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCG 134564 ||||| || || || || || || ||||||||||| || || |||| | || ||| Sbjct 1633 ACGAGATGGAGAGTCGACTCTTTCTGAATGTTGTAATCAGAAAGGGTGCGGCCATCTTCG 1692 Query 134565 AGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGA 134624 ||||| ||||| || || || | ||| || || || || || ||||| || || || || Sbjct 1693 AGCTGCTTGCCGGCGAAGATAAGACGTTGTTGGTCTGGGGGGATGCCCTCCTTATCCTGG 1752 Query 134625 ATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTA 134684 || || || || || | ||||| || || ||||| ||||| || || || || Sbjct 1753 ATCTTCGCCTTCACATTATCGATGGTGTCAGAGGACTCCACCTCGAGGGTGATCGTCTTC 1812 Query 134685 CCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || | || || ||||| || ||||| Sbjct 1813 CCTGTGAGGGTCTTGACGAAGATCTGCAT 1841 >seq173931 Length=6298 Score = 91.5 bits (100), Expect = 1e-13 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || |||||||| ||||| || || || ||||| || ||||||||||||| | ||| || Sbjct 5725 AGACGCAACACCAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGCTGAGAGTGCGA 5666 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTAT 134608 || |||||||| || || ||||| |||| ||| ||||||||||| || || Sbjct 5665 CCATCTTCGAGCTGCTTTCCAGCAAAGATCAGACGTTGCTGATCGGGGGGGAT 5613 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 504245529392280