Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Baeospora_20myosura_20[genbank_20GCA_5F001179705.1_202015-07-08] 182,489 sequences; 61,019,048 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq174905 215 7e-51 >seq174905 Length=21728 Score = 215 bits (238), Expect = 7e-51 Identities = 388/561 (69%), Gaps = 12/561 (2%) Strand=Plus/Plus Query 39616 GCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 39675 ||||||||| || ||| | |||||||||| || || | ||| || |||||||| | Sbjct 14669 GCAGGCGAAATCGGTATGCATTCCCTCATCTCGGCTGATGAGTTCATTTGAAAATGTTAA 14728 Query 39676 TCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAA 39735 |||||||| || || ||||| || | ||||||||| | ||| || || ||||| ||||| Sbjct 14729 GCCAGGCATGAGCCCCCGCTTCTTTATCCAAAATATTGAAGCGAACGAGCCAGAGAAGAA 14788 Query 39736 GATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTA----TCATTAT 39791 ||||||||| || || ||||| || || || | ||| | || || | || | | Sbjct 14789 GATGCCTTCGACCGCGGCAAAAGCGACTAGACGCTCAGC-AAATGTGGAGCCTTCGTCAG 14847 Query 39792 GTATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCAT 39851 ||||||||| | ||||| ||||| || ||| | ||||| ||||| ||||| || | Sbjct 14848 ATATCCACTTGAGGGCCCATTCAGCCTTGCGCTTGATGCAAGGAATTGTCTCTATGGCGT 14907 Query 39852 TAAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACA 39911 ||| ||||| | | ||| || || || | || || || || | || ||| Sbjct 14908 CAAATAGATACTCTCTTTGATTTGGGTCCTTGATGTAGGTGTCGATGAGAAGGGAATAGG 14967 Query 39912 TTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAA 39971 | |||| |||| ||| || ||| || ||||| || || ||||| | |||||| | | Sbjct 14968 TCTCTGCGTGGACGTTCTCCATCATAATTTGAAACCCATAGAAACAGCGTGCTTCGGCGA 15027 Query 39972 TTTGTACCTC--TGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGC 40029 |||||| || || | ||| | || | | ||||||||| || || || ||| ||| Sbjct 15028 CTTGTACTTCGTTGGAGAAA--CGTTGAACAAGATTTTCATTGACGATACCGTCAGAAGC 15085 Query 40030 GGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCG-GGTGTCAAT--TTATT 40086 |||||| || || | | ||| |||||||| ||| | | || | || || || Sbjct 15086 GGCAAAGAAGGCAAGGATGTGTGAAATAAAATGGCGTTCGTTGTCGTTTAGATTGTTGTT 15145 Query 40087 CCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGC 40146 |||||| | | || | |||| ||| | ||||||||| |||||||| || ||||| || Sbjct 15146 CCAGTCCATTAGGTCGTGAGATAAATCCAGTTCTTCAGCAGTCCAAAATGATGCCTCCGC 15205 Query 40147 CTTTTTGTACATGTTCCATAT 40167 ||| |||||||| | ||| || Sbjct 15206 CTTCTTGTACATCTGCCAGAT 15226 Score = 125 bits (138), Expect = 1e-23 Identities = 368/566 (65%), Gaps = 6/566 (1%) Strand=Plus/Minus Query 39608 AACATTAAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAA 39667 |||| | |||||||||||| || | |||||||| | ||| || | ||||| || Sbjct 16870 AACAAAAGGCAGGCGAAGTCGGTGTGCATACCCTCATCGCGACTGATGAGCTCGTTGGAG 16811 Query 39668 AATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCA 39727 || || | || ||||| | |||||||| || | ||| || |||| || || || ||| Sbjct 16810 AAGGTCAAGCCGGGCATCATTCCACGCTTCTTCATCCAGAAGATGGATGCGAACGACCCA 16751 Query 39728 GAAAAGAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTG---TA 39784 |||||||| || || || || || ||||| || ||||| | || ||| || | | | Sbjct 16750 GAAAAGAAAATCCCCTCAACGGCGGCAAAGGCGACAAGGCGTTCACCGAAAGTGGAACTC 16691 Query 39785 TCATTATGTATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCT 39844 | | |||||||| | ||||| ||||| || || | || || || ||||| Sbjct 16690 TGGTCGGAGATCCACTTGAGGGCCCAGTCAGCCTTGCGTTTGATGCAGGGAATGGTTTCA 16631 Query 39845 ATAGCATTAAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGA 39904 | ||| | || || | | || | | ||||| | || || || || | ||| Sbjct 16630 ACAGCGTCGAACAGGAAGTCGCGTTGAGCGGGCTCTTTGATGTACGTGTCGATGAGGAGA 16571 Query 39905 CTATACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCT 39964 || |||| || ||||||||||| ||| ||||| || || || || || | || Sbjct 16570 GAGTAGGTTTCGGAGTGGATGTTTTCCATCATAATCTGGAAGCCATAGAAGCAACGAGCC 16511 Query 39965 TCAGTAATTTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCA 40024 || | |||||| || | || | ||| | |||||||| || || || ||| Sbjct 16510 TCGGCGGCTTGTACTTCACCGGAGAAGCGTTCGAGAAGGTTTTCATTGACGATACCGTCA 16451 Query 40025 CTAGCGGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCA---AT 40081 || || || || || | || ||| ||| || | || | | ||| Sbjct 16450 GACGCCGCGAAGAAAGCGAGAACGTGTGAAATGAAGTGGCGCTCGTTGTCGTTCAGGCGG 16391 Query 40082 TTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCC 40141 || |||||||||| | ||| || || | ||| | |||||||||||||| ||||||||| Sbjct 16390 TTGTTCCAGTCATGAAGATCCTTCGAGAGATCCATCTCTTCAGCTGTCCAGAACGACGCC 16331 Query 40142 TCTGCCTTTTTGTACATGTTCCATAT 40167 || || || |||||||| | ||| || Sbjct 16330 TCCGCTTTCTTGTACATCTGCCAGAT 16305 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 685341883749960