Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Baeospora_20myosura_20[genbank_20GCA_5F001179705.1_202015-07-08] 182,489 sequences; 61,019,048 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq174905 188 6e-43 >seq174905 Length=21728 Score = 188 bits (208), Expect = 6e-43 Identities = 382/561 (68%), Gaps = 12/561 (2%) Strand=Plus/Minus Query 43730 ATATGGCAAATGTACAAAAAAGCACAGGCGTCATTTTGGACAGCAGAAGAAGTTGATTTG 43789 || ||||| |||||||| || || |||| ||||||||||| || |||||| | ||||| Sbjct 15226 ATCTGGCAGATGTACAAGAAGGCGGAGGCATCATTTTGGACTGCTGAAGAACTGGATTTA 15167 Query 43790 ACTAAAGACTTAGCACATTGGATTGC--ATTAAAACCACAA-GAAAAACATTTTATATCT 43846 || | ||| || | |||| || |||| |||| ||| |||||||| || Sbjct 15166 TCTCACGACCTAATGGACTGGAACAACAATCTAAACGACAACGAACGCCATTTTATTTCA 15107 Query 43847 TTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTCGG 43906 | | || || ||||| || ||||| || |||||||||||| | ||| || Sbjct 15106 CACATCCTTGCCTTCTTTGCCGCTTCTGACGGTATCGTCAATGAAAATCTTGTTCAACGT 15047 Query 43907 TTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATA 43966 || | | ||||| ||| | | |||||||| ||||| ||||||||||||||| || Sbjct 15046 TTCTCCAACGAAGTACAAGTCGCCGAAGCACGCTGTTTCTATGGGTTTCAAATTATGATG 14987 Query 43967 GAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGATGGGCAC 44026 || || | || | || | || ||||| || || || |||||||| || | Sbjct 14986 GAGAACGTCCACGCAGAGACCTATTCCCTTCTCATCGACACCTACATCAAGGACCCAAAT 14927 Query 44027 GAGA---AGCATCGATTGTTTAATGCGATAGAAACAGTACCTGCGATTAAACATAAAGCA 44083 | | || ||| | ||| | || ||||| ||| | ||| || || | || || Sbjct 14926 CAAAGAGAGTATC---TATTTGACGCCATAGAGACAATTCCTTGCATCAAGCGCAAGGCT 14870 Query 44084 GACTGGGCCCTTAAATGGATAAAT-TCAAATGAT--TCTTTTGGAGAACGACTTGTCGCG 44140 || |||||||| || |||||| | | || | | | |||| || || || ||||| Sbjct 14869 GAATGGGCCCTCAAGTGGATATCTGACGAAGGCTCCACATTTGCTGAGCGTCTAGTCGCT 14810 Query 44141 TTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGGTTAAAG 44200 ||||| | || |||||||| ||||| || || ||||| || | ||||||||| ||||| Sbjct 14809 TTTGCCGCGGTCGAAGGCATCTTCTTCTCTGGCTCGTTCGCTTCAATATTTTGGATAAAG 14750 Query 44201 AAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGC 44260 || || || | |||||||| || || ||||||||||| | || || || ||||| || Sbjct 14749 AAGCGGGGGCTCATGCCTGGCTTAACATTTTCAAATGAACTCATCAGCCGAGATGAGGGA 14690 Query 44261 TTACATTGCGATTTTGCTTGC 44281 | ||| |||||| || ||| Sbjct 14689 ATGCATACCGATTTCGCCTGC 14669 Score = 140 bits (154), Expect = 3e-28 Identities = 368/549 (67%), Gaps = 32/549 (6%) Strand=Plus/Plus Query 43730 ATATGGCAAATGTACAAAAAAGCACAGGCGTCATTTTGGACAGCAGAAGAAGTTGATTTG 43789 || ||||| |||||||| ||||| ||||||| || |||||||| ||||| | ||| | Sbjct 16305 ATCTGGCAGATGTACAAGAAAGCGGAGGCGTCGTTCTGGACAGCTGAAGAGATGGATCTC 16364 Query 43790 ACTAAAGA-CTTAGCACATTGGATTGCATTAA-------AACCACAA-GAAAAACATTTT 43840 | || || ||| ||| || || | || ||| |||| || || || Sbjct 16365 TCGAAGGATCTT----CAT--GACTGGAACAACCGCCTGAACGACAACGAGCGCCACTTC 16418 Query 43841 ATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTT 43900 || || ||| | || || || || ||| ||||| || ||||||||||| | | Sbjct 16419 ATTTCACACGTTCTCGCTTTCTTCGCGGCGTCTGACGGTATCGTCAATGAAAACCTTCTC 16478 Query 43901 AGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATT 43960 || || | ||||| ||| | || || || || || ||||| || || ||| Sbjct 16479 GAACGCTTCTCCGGTGAAGTACAAGCCGCCGAGGCTCGTTGCTTCTATGGCTTCCAGATT 16538 Query 43961 GCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGAT 44020 || ||||| || || || |||| ||| ||| || || || |||||||||||||| Sbjct 16539 ATGATGGAAAACATCCACTCCGAAACCTACTCTCTCCTCATCGACACGTACATCAAAGAG 16598 Query 44021 GG-GC---ACGAGAAGCATCGATTGTTTAATGCGATAGAAAC-AGTACCTGCGATTAAAC 44075 || ||| || | || |||| | || | ||||| | | ||||| || |||| Sbjct 16599 CCCGCTCAACGCGA--CTTCC--TGTTCGACGCTGTTGAAACCATTCCCTGC-ATCAAAC 16653 Query 44076 ATAAAGCAGACTGGGCCCTTAAATGGATAAATTC-AAATGATT----CTTTTGGAGAACG 44130 || || ||||||||||| || ||||| | | | || | |||| || ||||| Sbjct 16654 GCAAGGCTGACTGGGCCCTCAAGTGGAT--CTCCGACCAGAGTTCCACTTTCGGTGAACG 16711 Query 44131 ACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATT 44190 |||||||| ||||| | || || || ||||||||||| || ||||| || |||| || Sbjct 16712 CCTTGTCGCCTTTGCCGCCGTTGAGGGGATTTTCTTTTCTGGGTCGTTCGCATCCATCTT 16771 Query 44191 TTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCG 44250 ||| | ||||| || || ||||||| || ||||| || || || ||| | || ||||| Sbjct 16772 CTGGATGAAGAAGCGTGGAATGATGCCCGGCTTGACCTTCTCCAACGAGCTCATCAGTCG 16831 Query 44251 TGATGAAGG 44259 ||||| || Sbjct 16832 CGATGAGGG 16840 Score = 84.2 bits (92), Expect = 2e-11 Identities = 115/161 (71%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 44399 ATAGGAATGAATGAACTTTTGATGAACCAATATATTGAATACATTGCAGATCGTTTACTT 44458 ||||| || |||| | | ||| |||||| ||||||| | | || ||||| ||||| Sbjct 14498 ATAGGCATCAATGCGCCACTAATGTGCCAATACATTGAATTCGTCGCCGATCGCTTACTC 14439 Query 44459 TTGGAACTGGGTTGCGATAAACACTATATTGTACAAAACCCGTTTGATTTTATGGAAAAT 44518 |||| || || ||| ||||||||| | | ||||||| || || || ||||| | Sbjct 14438 GTGGATCTTGGCAACGAAAAACACTATCATTCAAAAAACCCCTTCGACTTCATGGATATG 14379 Query 44519 ATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAAAACGCGT 44559 || || | || ||||| | |||||||||||||| || || Sbjct 14378 ATATCACTAGAGGGCAAGGCGAACTTTTTTGAAAAGCGTGT 14338 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396572024196445