Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Baeospora_20myosura_20[genbank_20GCA_5F001179705.1_202015-07-08] 182,489 sequences; 61,019,048 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq178594 127 2e-24 seq174905 104 3e-17 seq175168 86.0 7e-12 seq182117 84.2 2e-11 >seq178594 Length=29560 Score = 127 bits (140), Expect = 2e-24 Identities = 177/248 (71%), Gaps = 0/248 (0%) Strand=Plus/Minus Query 53180 CCTCAGTATCTTTTCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTC 53239 ||||| || | ||||||| || ||| | ||||||||||| || || | | |||| Sbjct 5957 CCTCAACATATGATCATGCGTGTGGCCGTTGGTATCCACGGCGATGATATCGACCATGTC 5898 Query 53240 CGTGAGACGTACGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTC 53299 | |||||| ||| || | ||| || ||||| || |||||| |||| ||||||||| Sbjct 5897 CTTGAGACCTACAACCTCATGTCAGAACGTTACTTCACACACGCCTCGCCTACCCTGTTC 5838 Query 53300 AACGCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGAC 53359 ||||||||||| || || || | || ||||||||| || |||||||||||| Sbjct 5837 AACGCTGGTACACCCCATCCGCAACTCTCTTCCTGCTTCCTAGTCTGCATGAAGGATGAC 5778 Query 53360 TCGATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGT 53419 || ||||| || |||||||| || |||||| || ||| || |||| | ||| Sbjct 5777 TCCATCGATGGTATCTACGATACTCTCAAGAGCTGCGCCATGATTAGCAAGACTGCCGGT 5718 Query 53420 GGTATCGG 53427 |||||||| Sbjct 5717 GGTATCGG 5710 Score = 87.8 bits (96), Expect = 2e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 53492 GGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGT 53551 |||||||| ||||||||||| | || | ||| || || || || | || ||||| Sbjct 5592 GGAATCGTTCCTATGCTCCGAGCCTATGATGCCACCGCTCGTTATGTTGATCAAGGTGGC 5533 Query 53552 GGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAG 53611 ||||| || | |||||||||||||||||||| ||||| || || || | ||| Sbjct 5532 AACAAGCGTCCCGGAGCTTTCGCCATCTACCTCGAGCCATGGCATGCGGATGTTTTCGAG 5473 Query 53612 TTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTTTACA 53671 || ||||| ||| | ||| || || | || ||| ||| ||||| ||||| Sbjct 5472 TTCCTCGATCTGAGGAAGAACCACGGCAAGGAGGAGTCTCGCGCTCGTGATTTGTTTTAC 5413 Query 53672 GCTCTGTGGATTCCGGACCTCTT 53694 || ||||||||||| || || || Sbjct 5412 GCACTGTGGATTCCTGATCTTTT 5390 >seq174905 Length=21728 Score = 104 bits (114), Expect = 3e-17 Identities = 312/476 (66%), Gaps = 18/476 (4%) Strand=Plus/Plus Query 74769 CCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTC 74828 || ||||||| ||| || | |||||| ||||| | | ||||||||| || || |||||| Sbjct 14691 CCCTCATCTCGGCTGATGAGTTCATTTGAAAATGTTAAGCCAGGCATGAGCCCCCGCTTC 14750 Query 74829 TTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAG 74888 || | |||||| || | | ||| || ||| |||||||||||||||||| ||||| Sbjct 14751 TTTATCCAAAATATTGAAGCGAACGAGCCAGAGAAGAAGATGCCTTCGACCGCGGCAAAA 14810 Query 74889 GCGACAAGGCGTTGCGCGAACGGTG---CATCGGAAGTCATCCAAGTCTGAGCCCATTCA 74945 ||||| || || | || || | | | ||| || ||||| | | ||||||||| Sbjct 14811 GCGACTAGACGCTCAGCAAATGTGGAGCCTTCGTCAGATATCCACTTGAGGGCCCATTCA 14870 Query 74946 GCTTTTCGTTTGACCGCAGGGACAGTATCGATCGCTTGGAAGAGGCTTGCCTTCTCTTCG 75005 || || || |||| ||| | || || || || | || || | | |||||| | Sbjct 14871 GCCTTGCGCTTGATGCAAGGAATTGTCTCTATGGCGTCAAATAG--ATAC--TCTCTTTG 14926 Query 75006 ----GGATCCTTGACGAGCTTGTCAATCATAAGTGAGTACGTCTCCGAATGAATCGACTC 75061 || ||||||| | |||| || | ||| || || ||||| | || | ||| Sbjct 14927 ATTTGGGTCCTTGATGTAGGTGTCGATGAGAAGGGAATAGGTCTCTGCGTGGACGTTCTC 14986 Query 75062 GTTGAACGACTGGTACGCGTAGAAAGACCGCGCCTCTGCAATCTGTACATCCTTTGAAAA 75121 | | || || | |||||| | || || || || | ||||| || || || || Sbjct 14987 CATCATAATTTGAAACCCATAGAAACAGCGTGCTTCGGCGACTTGTACTTCGTTGGAGAA 15046 Query 75122 A--TTCATGTCGATATTCTCCATGACGATGCCGTCCGAGGCGGCGAAAAAAGCCAGTACC 75179 | || | | | ||| || ||||||| ||||| || ||||| || || || || | Sbjct 15047 ACGTTGA--ACAAGATTTTCATTGACGATACCGTCAGAAGCGGCAAAGAAGGCAAGGATG 15104 Query 75180 ATTTTGATAAAGTGGCGCTCATCGTCAGTGAG---TTTGTCCCAATCCTTCAGGTC 75232 | ||||| ||||| || | ||| | || |||| ||| ||| | ||||| Sbjct 15105 TGTGAAATAAAATGGCGTTCGTTGTCGTTTAGATTGTTGTTCCAGTCCATTAGGTC 15160 >seq175168 Length=26499 Score = 86.0 bits (94), Expect = 7e-12 Identities = 77/97 (79%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 158939 CAATAAACTCGCGGATGCTGTGCGTCTCTCCAGTCGCAATCACAAAGTCCTCTGGACCGG 158998 ||| ||||||||||| ||| ||||||||||| || | |||||||| ||||| | Sbjct 11757 CAACAAACTCGCGGACAGGGTGAGTCTCTCCAGTAGCGAGAACAAAGTCTTCTGGGGTCG 11698 Query 158999 GCTGTTGGAGCATGAGCCACATGGCCTCGACGTAATC 159035 ||||||| | |||||||||||| |||| |||||||| Sbjct 11697 GCTGTTGCAACATGAGCCACATCCCCTCAACGTAATC 11661 >seq182117 Length=22456 Score = 84.2 bits (92), Expect = 2e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 119084 TTGGCTAGCTTGGCACCGTATCCGTTCCGACCACCGGTCACGCGCTGCTCCTCGTCGTTG 119143 ||||| ||||| ||||||||||| || ||||||||| || | || ||| || |||| | Sbjct 17674 TTGGCGAGCTTCGCACCGTATCCATTACGACCACCGACCAGCCTCTTCTCGTCATCGTCG 17615 Query 119144 TAGTTGGAGCTGGTCAAAAGGTGCCCAAAGATGAGCTCGGGGAT 119187 || ||||||| | | ||||| ||||||||||| ||||| || Sbjct 17614 TAATTGGAGCCAGAGAGGAGGTGGCCAAAGATGAGTTCGGGAAT 17571 Score = 82.4 bits (90), Expect = 8e-11 Identities = 95/128 (74%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 118172 GCGTCCCGAACGTTGCGCGGCTTACCCCGCAGTGGAAACACGCCAAACTTGTCACGGCCC 118231 || || ||||||||| || | ||||| || || || || || ||||| |||| | || Sbjct 18774 GCCTCACGAACGTTGAGCAGTTTACCACGGAGGGGGAAAACACCAAAGTTGTTTCTACCA 18715 Query 118232 ACAACGCTCAAGCCGGCAATAGCAAGGGCCTTCGCCGAGTCACCCTCGGTAATAATAAGA 118291 || || | || || | | |||||||||||| || ||||||||||| |||| ||| ||| Sbjct 18714 ACGACACCCAGTCCACCGACAGCAAGGGCCTTGGCAGAGTCACCCTCAGTAAGAATGAGA 18655 Query 118292 GTGCACTC 118299 || || || Sbjct 18654 GTACAATC 18647 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 545967738742200