Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Baeospora_20myosura_20[genbank_20GCA_5F001179705.1_202015-07-08] 182,489 sequences; 61,019,048 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq181137 125 5e-24 >seq181137 Length=58212 Score = 125 bits (138), Expect = 5e-24 Identities = 146/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || ||||| ||||||||||| || || |||||||| || || || || || Sbjct 2069 ATGCAGATCTTTGTTAAGACCCTCACGGGCAAGACCATCACTCTTGAGGTGGAGTCTTCG 2010 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || |||| | | ||| ||| ||| ||||| || ||| | || ||||| || Sbjct 2009 GATACCATTGACAACGTGAAAGCAAAGATTCAAGACAAGGAGGGTATTCCCCCAGACCAG 1950 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| | || |||||||| || || || ||||||| || || ||| ||| |||||| Sbjct 1949 CAGCGTCTTATCTTTGCCGGGAAGCAGCTCGAAGACGGCCGTACCTTATCCGACTACAAC 1890 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || ||||| || Sbjct 1889 ATCCAGAAGGAGTCTAC 1873 Score = 102 bits (112), Expect = 5e-17 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || |||||||| || || |||||||| ||||| || || ||| | Sbjct 1841 ATGCAGATCTTCGTCAAGACCCTCACAGGGAAGACGATCACCCTCGAGGTGGAGTCCTCT 1782 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| | || | || | | || || || || | || ||||| || Sbjct 1781 GACACCATCGATAATGTGAAGGCGAAGA-TCCAGGATAAGGAGGGCATCCCCCCAGACCA 1723 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| ||| | || || |||||||| || || ||||| | ||||| | |||||||| Sbjct 1722 ACAACGTCTTATCTTCGCCGGCAAGCAGCTCGAAGATGGCCGCACCCTTTCTGATTACAA 1663 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || |||||||| || Sbjct 1662 CATTCAGAAAGAGTCGAC 1645 Score = 84.2 bits (92), Expect = 1e-11 Identities = 145/209 (69%), Gaps = 4/209 (2%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||| ||||| || ||||||||||| || |||||||| || || || || || | Sbjct 1614 AATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACGATCACGCTGGAGGTGGAGTCTTC 1555 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 |||||| | || | | || || || ||||| ||||| | || || ||||| Sbjct 1554 GGACACCATCGACAACGTGAAGGCGAAGATCCAGGACAAGGAAGGCATTCCTCCTGATCA 1495 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACG--CACTTTAGGCGATTAC 23787 || ||| | || || ||||| || || |||| || | || | |||| | ||||| Sbjct 1494 GCAACGTCTCATCTTCGCCGGGAAGCAGTTGGAGGATGGTCGTACCCTTTCG--GATTAT 1437 Query 23788 AACATACAAAAAGAGTCCACATTACATTT 23816 || || || || ||||| || | ||||| Sbjct 1436 AATATCCAGAAGGAGTCGACTCTTCATTT 1408 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337257838024412