Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Baeospora_20myosura_20[genbank_20GCA_5F001179705.1_202015-07-08] 182,489 sequences; 61,019,048 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq181137 152 1e-31 seq180796 102 2e-16 seq173931 89.7 1e-12 >seq181137 Length=58212 Score = 152 bits (168), Expect = 1e-31 Identities = 161/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| || |||||||| || ||||| || | |||||||| | | || | |||||| Sbjct 1630 AGGACGAGATGGAGAGTCGACTCTTTCTGAATGTTGTAATCAGAAAGGGTGCGGCCATCT 1689 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || ||||||||||| ||||||||||| || || || || ||||| || Sbjct 1690 TCGAGCTGCTTGCCGGCGAAGATAAGACGTTGTTGGTCTGGGGGGATGCCCTCCTTATCC 1749 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||||||| ||||||||||| |||| ||||| || | ||||||||| Sbjct 1750 TGGATCTTCGCCTTCACATTATCGATGGTGTCAGAGGACTCCACCTCGAGGGTGATCGTC 1809 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || || | || || | ||| | ||||| Sbjct 1810 TTCCCTGTGAGGGTCTTGACGAAGATCTGCAT 1841 Score = 143 bits (158), Expect = 6e-29 Identities = 154/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 225511 TGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGC 225570 || ||||| || || || |||| ||| ||||| | | || | ||||| || | |||| Sbjct 1411 TGAAGAGTCGACTCCTTCTGGATATTATAATCCGAAAGGGTACGACCATCCTCCAACTGC 1470 Query 225571 TTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTT 225630 ||||| |||||||| || ||||| || || || ||||| ||||||||||| |||||||| Sbjct 1471 TTCCCGGCGAAGATGAGACGTTGCTGATCAGGAGGAATGCCTTCCTTGTCCTGGATCTTC 1530 Query 225631 TGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTC 225690 |||||| ||||||||||| || | ||||| || | |||||||||||||||||| Sbjct 1531 GCCTTCACGTTGTCGATGGTGTCCGAAGACTCCACCTCCAGCGTGATCGTCTTGCCCGTG 1590 Query 225691 AAAGTTTTTATGAACACTTGCATT 225714 | || || | ||| | |||||| Sbjct 1591 AGGGTCTTGACGAAGATCTGCATT 1614 Score = 132 bits (146), Expect = 1e-25 Identities = 142/188 (76%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| || || || || || || || |||| ||||| |||| || || | || ||| Sbjct 1858 AGGACGAGATGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGGATAAGGTACGGCCGTCT 1917 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || ||||||||||| || |||||||| || || ||||| || |||||||| ||||||||| Sbjct 1918 TCGAGCTGCTTCCCGGCAAAGATAAGACGCTGCTGGTCTGGGGGAATACCCTCCTTGTCT 1977 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 || |||||| ||||| || ||||| || || | ||||| || | ||||| ||| Sbjct 1978 TGAATCTTTGCTTTCACGTTGTCAATGGTATCCGAAGACTCCACCTCAAGAGTGATGGTC 2037 Query 225682 TTGCCCGT 225689 |||||||| Sbjct 2038 TTGCCCGT 2045 Score = 86.0 bits (94), Expect = 1e-11 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| |||||||||||||| || || |||| |||||||| | | ||| | ||||| Sbjct 2309 AGGACGAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAATCCGAGAGAGTGCGGCCATCC 2368 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAAT 225608 || |||||||| ||||||||||| | || || ||||| || || || Sbjct 2369 TCAAGCTGCTTGCCAGCGAAGATCAAGCGCTGCTGGTCTGGTGGGAT 2415 >seq180796 Length=4932 Score = 102 bits (112), Expect = 2e-16 Identities = 106/139 (76%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 371365 AATGGTAATTTATGCATAGATAAACCAGGTACTCTCATATTAAATATCGTAGTAATAAAG 371424 || ||||||||||||||||| | |||| ||||||||||| | ||| |||| || Sbjct 4920 AAGGGTAATTTATGCATAGACATACCATTAGTTCTCATATTAAGTGCTGTACTAATGAAA 4861 Query 371425 TTTATAGCGCCTAGAAGAGAAGATATACCTGCAAGATGTAAACTAAATATTGCTAAATCG 371484 || ||||| || | | ||||||| ||||||||||||||||| || || |||||||| Sbjct 4860 TTAATAGCACCCAATAAGGAAGATACCCCTGCAAGATGTAAACTGAAGATAGCTAAATCA 4801 Query 371485 ACGGAACCGCCGGAGTGAG 371503 || || || || || |||| Sbjct 4800 ACAGATCCACCTGAATGAG 4782 >seq173931 Length=6298 Score = 89.7 bits (98), Expect = 1e-12 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | || || ||||||||||| || || || |||| ||||| ||| | ||| Sbjct 5729 ACGAAGACGCAACACCAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGCTGAGAGT 5670 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATAC 225610 | |||||||| |||||||| ||||| ||||| || ||||| || ||||| || |||| Sbjct 5669 GCGACCATCTTCGAGCTGCTTTCCAGCAAAGATCAGACGTTGCTGATCGGGGGGGATAC 5611 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1189742894727366