Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Baeospora_20myosura_20[genbank_20GCA_5F001179705.1_202015-07-08] 182,489 sequences; 61,019,048 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq174905 194 2e-44 >seq174905 Length=21728 Score = 194 bits (214), Expect = 2e-44 Identities = 378/557 (68%), Gaps = 6/557 (1%) Strand=Plus/Plus Query 48141 CATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGA 48200 || || ||||| ||| | || ||||||| || || | ||| || |||||||| | Sbjct 14670 CAGGCGAAATCGGTATGCATTCCCTCATCTCGGCTGATGAGTTCATTTGAAAATGTTAAG 14729 Query 48201 CCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAAT 48260 || ||||| || || || || || | ||||||||||| ||||| || ||||| ||||| Sbjct 14730 CCAGGCATGAGCCCCCGCTTCTTTATCCAAAATATTGAAGCGAACGAGCCAGAGAAGAAG 14789 Query 48261 ATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGG---CTTCGTTGTGT 48317 |||||||| || || ||||| ||| || | ||| | | ||| |||||| | Sbjct 14790 ATGCCTTCGACCGCGGCAAAAGCGACTAGACGCTCAGCAAATGTGGAGCCTTCGTCAGAT 14849 Query 48318 ATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTA 48377 |||||| | ||||| |||||||| ||| | ||||| ||||| ||||| || | | Sbjct 14850 ATCCACTTGAGGGCCCATTCAGCCTTGCGCTTGATGCAAGGAATTGTCTCTATGGCGTCA 14909 Query 48378 AAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATT 48437 || ||| | | | ||| ||| || || | ||| || || || | ||| ||| | Sbjct 14910 AATAGATACTCTCTTTGATTTGGGTCCTTGATGTAGGTGTCGATGAGAAGGGAATAGGTC 14969 Query 48438 TCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATC 48497 || | ||| | || || || || ||||| || || ||||| | ||||| | || Sbjct 14970 TCTGCGTGGACGTTCTCCATCATAATTTGAAACCCATAGAAACAGCGTGCTTCGGCGACT 15029 Query 48498 TGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAGCA 48557 ||||| || | | || |||| | | | ||| ||||| || || || ||| ||| ||| Sbjct 15030 TGTACTTCGTTGGAGAAACGTTGAACAAGATTTTCATTGACGATACCGTCAGAAGCGGCA 15089 Query 48558 AAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAG---TTTATTCCAG 48614 || || || | | ||| |||||||| ||||||| | || || |||||| Sbjct 15090 AAGAAGGCAAGGATGTGTGAAATAAAATGGCGTTCGTTGTCGTTTAGATTGTTGTTCCAG 15149 Query 48615 TCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTT 48674 || | | || | |||| ||| | ||||||||| ||||||||||||||||| || || Sbjct 15150 TCCATTAGGTCGTGAGATAAATCCAGTTCTTCAGCAGTCCAAAATGATGCCTCCGCCTTC 15209 Query 48675 TTATACATATTCCATAT 48691 || ||||| | ||| || Sbjct 15210 TTGTACATCTGCCAGAT 15226 Score = 140 bits (154), Expect = 4e-28 Identities = 355/537 (66%), Gaps = 6/537 (1%) Strand=Plus/Minus Query 48161 ACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTT 48220 ||| ||||| | ||| || | ||||| || || || | |||||||| | |||||| || Sbjct 16841 ACCCTCATCGCGACTGATGAGCTCGTTGGAGAAGGTCAAGCCGGGCATCATTCCACGCTT 16782 Query 48221 TTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAA 48280 || | ||| || || | ||||| || ||||||||||| || || || ||||| ||||| Sbjct 16781 CTTCATCCAGAAGATGGATGCGAACGACCCAGAAAAGAAAATCCCCTCAACGGCGGCAAA 16722 Query 48281 TGCGGTAAGTCTCTCTCCGTAACTGG--CT-TCGTTGTGTATCCACCGTTGTGCCCAATC 48337 ||| ||| | || ||| || ||| || | || | |||||| | ||||| || Sbjct 16721 GGCGACAAGGCGTTCACCGAAAGTGGAACTCTGGTCGGAGATCCACTTGAGGGCCCAGTC 16662 Query 48338 AGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAAGtttttttCATT 48397 |||||| || | || || || ||||| | ||| | || || |||| || | Sbjct 16661 AGCCTTGCGTTTGATGCAGGGAATGGTTTCAACAGCGTCGAACAGGAAGTCGCGTTGAGC 16602 Query 48398 GCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGAGTGAATATTTTCAAT 48457 | ||||| | ||| || || || | ||| || |||||||||| || ||||| || Sbjct 16601 GGGCTCTTTGATGTACGTGTCGATGAGGAGAGAGTAGGTTTCGGAGTGGATGTTTTCCAT 16542 Query 48458 TGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTCCGTACAAAATCG 48517 ||||| || || || || || | || || | | ||||| || | || || Sbjct 16541 CATAATCTGGAAGCCATAGAAGCAACGAGCCTCGGCGGCTTGTACTTCACCGGAGAAGCG 16482 Query 48518 TTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAGCAAAAAATGCTAATACATGTTT 48577 ||| | || ||||| || || || ||| || || || || || | || ||| Sbjct 16481 TTCGAGAAGGTTTTCATTGACGATACCGTCAGACGCCGCGAAGAAAGCGAGAACGTGTGA 16422 Query 48578 AATAAAATATTTTTCGTTGGAAGTCA---GTTTATTCCAGTCATTGATATCTTTTGATAT 48634 ||| || | |||||| ||| | || |||||||||| | ||| || || | Sbjct 16421 AATGAAGTGGCGCTCGTTGTCGTTCAGGCGGTTGTTCCAGTCATGAAGATCCTTCGAGAG 16362 Query 48635 ATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTATACATATTCCATAT 48691 ||| | |||||||||||||| || || ||||| ||||| || ||||| | ||| || Sbjct 16361 ATCCATCTCTTCAGCTGTCCAGAACGACGCCTCCGCTTTCTTGTACATCTGCCAGAT 16305 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 693084182316960