Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Baeospora_20myosura_20[genbank_20GCA_5F001179705.1_202015-07-08] 182,489 sequences; 61,019,048 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq181137 174 4e-38 seq178676 96.9 8e-15 >seq181137 Length=58212 Score = 174 bits (192), Expect = 4e-38 Identities = 162/206 (79%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || |||||||| || |||||||||||||||||||| ||| ||| Sbjct 1838 CAGATCTTCGTCAAGACCCTCACAGGGAAGACGATCACCCTCGAGGTGGAGTCCTCTGAC 1779 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || || || ||||| ||||| || || || ||||| || ||||| ||| Sbjct 1778 ACCATCGATAATGTGAAGGCGAAGATCCAGGATAAGGAGGGCATCCCCCCAGACCAACAA 1719 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || |||||||||||||| || |||||||||||||| | || ||| | ||||| ||| | Sbjct 1718 CGTCTTATCTTCGCCGGCAAGCAGCTCGAAGATGGCCGCACCCTTTCTGATTACAACATT 1659 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || ||||| || || || ||||| || Sbjct 1658 CAGAAAGAGTCGACTCTCCATCTCGT 1633 Score = 147 bits (162), Expect = 5e-30 Identities = 153/201 (76%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || ||||| || || |||||||| || |||||||| || ||| Sbjct 1610 CAGATCTTCGTCAAGACCCTCACGGGCAAGACGATCACGCTGGAGGTGGAGTCTTCGGAC 1551 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| ||||| || ||||| |||||||| ||||| || ||||| || |||||| Sbjct 1550 ACCATCGACAACGTGAAGGCGAAGATCCAGGACAAGGAAGGCATTCCTCCTGATCAGCAA 1491 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||||||||| || ||| | || ||||| | || ||| | |||||||| || Sbjct 1490 CGTCTCATCTTCGCCGGGAAGCAGTTGGAGGATGGTCGTACCCTTTCGGATTATAATATC 1431 Query 178104 CAAAAAGAATCAACACTGCAT 178124 || || || || || || ||| Sbjct 1430 CAGAAGGAGTCGACTCTTCAT 1410 Score = 132 bits (146), Expect = 1e-25 Identities = 153/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || || || ||||| || || || ||||| || |||||||| || || Sbjct 2066 CAGATCTTTGTTAAGACCCTCACGGGCAAGACCATCACTCTTGAGGTGGAGTCTTCGGAT 2007 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || ||||| ||| ||||||||| ||||| || || || || || |||||||| Sbjct 2006 ACCATTGACAACGTGAAAGCAAAGATTCAAGACAAGGAGGGTATTCCCCCAGACCAGCAG 1947 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || |||||||| ||||| || ||||||||||| || | || | |||| || ||| || Sbjct 1946 CGTCTTATCTTTGCCGGGAAGCAGCTCGAAGACGGCCGTACCTTATCCGACTACAACATC 1887 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || || ||||| || Sbjct 1886 CAGAAGGAGTCTACCCTTCATCTCGT 1861 Score = 84.2 bits (92), Expect = 5e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || |||||||| ||||| || |||||||||||||| || |||||| Sbjct 2565 CAGATCTTCGTAAAGACTCTCACTGGAAAGACAATCACCCTCGAGGTTGAGTCCTCAGAT 2506 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGG 178024 ||||| || |||||||| ||||| || ||||| || || Sbjct 2505 ACCATTGACAACGTCAAGGCCAAGATCCAAGACAAGGAGGG 2465 >seq178676 Length=5582 Score = 96.9 bits (106), Expect = 8e-15 Identities = 82/101 (81%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| || || ||||| ||||| ||||||||||| |||||||| || ||| Sbjct 4413 CAAATTTTCGTCAAGACCCTCACGGGAAAGACGATCACCCTAGAGGTGGAGTCGTCGGAC 4472 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGG 178024 |||||||| |||||||| ||||| |||||||| || || Sbjct 4473 ACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGG 4513 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1200916707555866