Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Basidioascus_20undulatus_20[genbank_20GCA_5F000826855.1_202015-01-
21] 2,992 sequences; 32,128,072 total letters
Query= NC_002331.1
Length=178733
Score E
Sequences producing significant alignments: (Bits) Value
seq2870 109 6e-19
seq305 100 3e-16
seq2900 87.8 2e-12
seq278 87.8 2e-12
seq2247 86.0 7e-12
>seq2870
Length=12576
Score = 109 bits (120), Expect = 6e-19
Identities = 134/178 (75%), Gaps = 4/178 (2%)
Strand=Plus/Plus
Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051
|||||| ||||| ||||| || | || ||||| |||| || |||||||| ||||||||
Sbjct 9886 CTCCTTCTGAATGTTGTAGTCCGAGAGGGTCCGGCCGTCCTCAAGCTGCTTGCCAGCGAA 9945
Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 43110
|| | ||||||||||| | ||| | || |||||||||| ||| | || | |||| ||
Sbjct 9946 GATCAAGCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCC-TGAATCTTGGCCTTGA-CG 10003
Query 43111 TCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCT 43167
| | | | |||||| || || || |||| ||||||||| ||||| || || ||||
Sbjct 10004 TTGTCGATCGTGTCCGAGGACTCGACCTCGAGCGTGATGGTCTTGCCTGTGAGGGTCT 10061
Score = 104 bits (114), Expect = 3e-17
Identities = 130/176 (74%), Gaps = 2/176 (1%)
Strand=Plus/Plus
Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052
|| || || || ||||| || | || ||||| |||| || |||||||| ||||||||
Sbjct 9597 TCTTTCTGGATGTTGTAGTCCGAGAGGGTCCGGCCGTCCTCAAGCTGCTTGCCAGCGAAG 9656
Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 43112
|| | ||||||||||||| || | || |||||||||| ||| || |||| |||
Sbjct 9657 ATCAAGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGA-CGTT 9715
Query 43113 G-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCT 43167
| | | |||||| || || || |||| ||||||||||||||| || || ||||
Sbjct 9716 GTCGATCGTGTCCGAGGACTCAACCTCGAGCGTGATGGTTTTGCCGGTGAGGGTCT 9771
>seq305
Length=9259
Score = 100 bits (110), Expect = 3e-16
Identities = 130/177 (73%), Gaps = 2/177 (1%)
Strand=Plus/Plus
Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051
|||||| || || ||||| || | || || || |||| || |||||||| ||||||||
Sbjct 7903 CTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCGTCCTCGAGCTGCTTGCCAGCGAA 7962
Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111
||||| ||||||||||||| ||| | | ||||||||| ||| || |||| |||
Sbjct 7963 GATGAGGCGCTGCTGGTCGGGCGGGATACCTTCCTTGTCCTGGATCTTGGCCTTGA-CGT 8021
Query 43112 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCT 43167
| | | |||||| || || || |||| |||||| || ||||| || || ||||
Sbjct 8022 TGTCGATCGTGTCCGAGGACTCGACCTCGAGCGTGATCGTCTTGCCGGTGAGGGTCT 8078
>seq2900
Length=32347
Score = 87.8 bits (96), Expect = 2e-12
Identities = 106/142 (75%), Gaps = 2/142 (1%)
Strand=Plus/Plus
Query 43027 CGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCT 43086
|||| || |||||||| || || || ||||| ||||||||||||| || | | |||||
Sbjct 25849 CGTCCTCGAGCTGCTTGCCGGCAAAGATGAGGCGCTGCTGGTCGGGGGGGATACCCTCCT 25908
Query 43087 TGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTG 43145
||||| ||| ||| |||| ||| | | | ||||| || ||||| |||| |||
Sbjct 25909 TGTCCTGGATCTTTGCCTTGA-CGTTGTCGATGGTGTCCGAAGACTCCACCTCGAGGGTG 25967
Query 43146 ATGGTTTTGCCCGTTAGCGTCT 43167
||||| |||||||| || ||||
Sbjct 25968 ATGGTCTTGCCCGTGAGGGTCT 25989
>seq278
Length=9506
Score = 87.8 bits (96), Expect = 2e-12
Identities = 108/148 (73%), Gaps = 0/148 (0%)
Strand=Plus/Minus
Query 43020 GTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACG 43079
||||| |||| || |||||||| |||||||| || | ||||||||||||| || | |
Sbjct 9504 GTCCGGCCGTCCTCAAGCTGCTTGCCAGCGAAGATCAAGCGCTGCTGGTCGGGGGGGATG 9445
Query 43080 CTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCG 43139
| |||||||||| ||| || |||| | | | |||||| || || || |||
Sbjct 9444 CCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATCGTGTCCGAGGACTCGACCTCG 9385
Query 43140 ACCGTGATGGTTTTGCCCGTTAGCGTCT 43167
| ||||||||| ||||| || || ||||
Sbjct 9384 AGCGTGATGGTCTTGCCGGTGAGGGTCT 9357
>seq2247
Length=21484
Score = 86.0 bits (94), Expect = 7e-12
Identities = 110/149 (74%), Gaps = 2/149 (1%)
Strand=Plus/Minus
Query 43027 CGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCT 43086
|||| || |||||||| |||||||| || || ||||||||||| | || | || |||||
Sbjct 11601 CGTCCTCGAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCAGGGGGGATGCCCTCCT 11542
Query 43087 TGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTG 43145
||||| ||| || |||| ||| | | | |||||| || ||||| |||| |||
Sbjct 11541 TGTCCTGGATCTTGGCCTTGA-CGTTGTCGATGGTGTCGGAAGACTCCACCTCGAGGGTG 11483
Query 43146 ATGGTTTTGCCCGTTAGCGTCTTTACAAA 43174
|| || || ||||| || ||||| || ||
Sbjct 11482 ATCGTCTTACCCGTCAGGGTCTTGACGAA 11454
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 571796214021760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |