Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Basidioascus_20undulatus_20[genbank_20GCA_5F000826855.1_202015-01- 21] 2,992 sequences; 32,128,072 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq2870 109 6e-19 seq305 100 3e-16 seq2900 87.8 2e-12 seq278 87.8 2e-12 seq2247 86.0 7e-12 >seq2870 Length=12576 Score = 109 bits (120), Expect = 6e-19 Identities = 134/178 (75%), Gaps = 4/178 (2%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| ||||| ||||| || | || ||||| |||| || |||||||| |||||||| Sbjct 9886 CTCCTTCTGAATGTTGTAGTCCGAGAGGGTCCGGCCGTCCTCAAGCTGCTTGCCAGCGAA 9945 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 43110 || | ||||||||||| | ||| | || |||||||||| ||| | || | |||| || Sbjct 9946 GATCAAGCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCC-TGAATCTTGGCCTTGA-CG 10003 Query 43111 TCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCT 43167 | | | | |||||| || || || |||| ||||||||| ||||| || || |||| Sbjct 10004 TTGTCGATCGTGTCCGAGGACTCGACCTCGAGCGTGATGGTCTTGCCTGTGAGGGTCT 10061 Score = 104 bits (114), Expect = 3e-17 Identities = 130/176 (74%), Gaps = 2/176 (1%) Strand=Plus/Plus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 || || || || ||||| || | || ||||| |||| || |||||||| |||||||| Sbjct 9597 TCTTTCTGGATGTTGTAGTCCGAGAGGGTCCGGCCGTCCTCAAGCTGCTTGCCAGCGAAG 9656 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 43112 || | ||||||||||||| || | || |||||||||| ||| || |||| ||| Sbjct 9657 ATCAAGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGA-CGTT 9715 Query 43113 G-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCT 43167 | | | |||||| || || || |||| ||||||||||||||| || || |||| Sbjct 9716 GTCGATCGTGTCCGAGGACTCAACCTCGAGCGTGATGGTTTTGCCGGTGAGGGTCT 9771 >seq305 Length=9259 Score = 100 bits (110), Expect = 3e-16 Identities = 130/177 (73%), Gaps = 2/177 (1%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||| || | || || || |||| || |||||||| |||||||| Sbjct 7903 CTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCGTCCTCGAGCTGCTTGCCAGCGAA 7962 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 ||||| ||||||||||||| ||| | | ||||||||| ||| || |||| ||| Sbjct 7963 GATGAGGCGCTGCTGGTCGGGCGGGATACCTTCCTTGTCCTGGATCTTGGCCTTGA-CGT 8021 Query 43112 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCT 43167 | | | |||||| || || || |||| |||||| || ||||| || || |||| Sbjct 8022 TGTCGATCGTGTCCGAGGACTCGACCTCGAGCGTGATCGTCTTGCCGGTGAGGGTCT 8078 >seq2900 Length=32347 Score = 87.8 bits (96), Expect = 2e-12 Identities = 106/142 (75%), Gaps = 2/142 (1%) Strand=Plus/Plus Query 43027 CGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCT 43086 |||| || |||||||| || || || ||||| ||||||||||||| || | | ||||| Sbjct 25849 CGTCCTCGAGCTGCTTGCCGGCAAAGATGAGGCGCTGCTGGTCGGGGGGGATACCCTCCT 25908 Query 43087 TGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTG 43145 ||||| ||| ||| |||| ||| | | | ||||| || ||||| |||| ||| Sbjct 25909 TGTCCTGGATCTTTGCCTTGA-CGTTGTCGATGGTGTCCGAAGACTCCACCTCGAGGGTG 25967 Query 43146 ATGGTTTTGCCCGTTAGCGTCT 43167 ||||| |||||||| || |||| Sbjct 25968 ATGGTCTTGCCCGTGAGGGTCT 25989 >seq278 Length=9506 Score = 87.8 bits (96), Expect = 2e-12 Identities = 108/148 (73%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 43020 GTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACG 43079 ||||| |||| || |||||||| |||||||| || | ||||||||||||| || | | Sbjct 9504 GTCCGGCCGTCCTCAAGCTGCTTGCCAGCGAAGATCAAGCGCTGCTGGTCGGGGGGGATG 9445 Query 43080 CTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCG 43139 | |||||||||| ||| || |||| | | | |||||| || || || ||| Sbjct 9444 CCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATCGTGTCCGAGGACTCGACCTCG 9385 Query 43140 ACCGTGATGGTTTTGCCCGTTAGCGTCT 43167 | ||||||||| ||||| || || |||| Sbjct 9384 AGCGTGATGGTCTTGCCGGTGAGGGTCT 9357 >seq2247 Length=21484 Score = 86.0 bits (94), Expect = 7e-12 Identities = 110/149 (74%), Gaps = 2/149 (1%) Strand=Plus/Minus Query 43027 CGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCT 43086 |||| || |||||||| |||||||| || || ||||||||||| | || | || ||||| Sbjct 11601 CGTCCTCGAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCAGGGGGGATGCCCTCCT 11542 Query 43087 TGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTG 43145 ||||| ||| || |||| ||| | | | |||||| || ||||| |||| ||| Sbjct 11541 TGTCCTGGATCTTGGCCTTGA-CGTTGTCGATGGTGTCGGAAGACTCCACCTCGAGGGTG 11483 Query 43146 ATGGTTTTGCCCGTTAGCGTCTTTACAAA 43174 || || || ||||| || ||||| || || Sbjct 11482 ATCGTCTTACCCGTCAGGGTCTTGACGAA 11454 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571796214021760